AntonS-bio/entropy

Spadar, AORCID logo (2022). AntonS-bio/entropy. [Dataset]. GitHub. https://github.com/AntonS-bio/entropy
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Analysis scripts for: "Genomic epidemiological analysis of Klebsiella pneumoniae from Portuguese hospitals reveals insights into circulating antimicrobial resistance". This compares genes across samples and generate phylogenetic tree based on most diverse genes. The most diverse (based on Shannon entropy) genes are taken for construction of phylogenetic tree. The required programs are mafft, IQTREE and BLAST.

Keywords

Antibiotics, Antimicrobial resistance, Bacterial genomics

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