AntonS-bio/entropy

Spadar, AORCID logo (2022). AntonS-bio/entropy. [Dataset]. GitHub. https://github.com/AntonS-bio/entropy
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Analysis scripts for: "Genomic epidemiological analysis of Klebsiella pneumoniae from Portuguese hospitals reveals insights into circulating antimicrobial resistance". This compares genes across samples and generate phylogenetic tree based on most diverse genes. The most diverse (based on Shannon entropy) genes are taken for construction of phylogenetic tree. The required programs are mafft, IQTREE and BLAST.

Alternative Title

entropy

Keywords

Antibiotics, Antimicrobial resistance, Bacterial genomics

Item Type Dataset
Capture method Other
Date 6 January 2022
Language(s) of written materials English
Creator(s) Spadar, AORCID logo
Associated roles Phelan, J (Researcher), Elias, R (Researcher), Modesto, A (Researcher), Caneiras, C (Researcher), Marques, C (Researcher), Lito, L (Researcher), Pinto, M (Researcher), Cavaco-Silva, P (Researcher), Ferreira, H (Researcher), Pomba, C (Researcher), Da Silva, GJ (Researcher), Saavedra, MJ (Researcher), Melo-Cristino, J (Researcher), Duarte, A (Researcher), Campino, S (Researcher), Perdigão, J (Researcher) and Clark, TG (Researcher)
LSHTM Faculty/Department Faculty of Epidemiology and Population Health
Faculty of Infectious and Tropical Diseases > Department of Infection Biology
Participating Institutions London School of Hygiene & Tropical Medicine, London, United Kingdom, Universidade de Lisboa, Lisbon, Portugal, Universidade Lusófona de Humanidades E Tecnologias, Lisbon, Portugal, Centro Hospitalar Universitário Lisboa Norte, Lisbon, Portugal, Instituto Universitário Egas Moniz, Caparica, Portugal, Technophage, Lisboa, Portugal, University of Porto, Porto, Portugal, University of Coimbra, Coimbra, Portugal, University of Trás-Os-Montes and Alto Douro, Vila Real, Portugal
Funders
Project
Funder
Grant Number
Funder URI
UNSPECIFIED
Medical Research Council
MR/M01360X/1
http://dx.doi.org/10.13039/501100000265
UNSPECIFIED
Biotechnology and Biological Sciences Research Council
BB/R013063/1
http://dx.doi.org/10.13039/501100000268
UNSPECIFIED
Medical Research Council
MR/K000551/1
http://dx.doi.org/10.13039/501100000265
UNSPECIFIED
Medical Research Council
MR/R020973/1
http://dx.doi.org/10.13039/501100000265
UNSPECIFIED
Medical Research Council
MR/N010469/1
http://dx.doi.org/10.13039/501100000265
UNSPECIFIED
Fundação para a Ciência e a Tecnologia
CEECIND/00394/2017
http://dx.doi.org/10.13039/501100001871
UNSPECIFIED
Fundação para a Ciência e a Tecnologia
UID/DTP/04138/2019
http://dx.doi.org/10.13039/501100001871
Date Deposited 15 Dec 2022 13:20
Last Modified 15 Dec 2022 13:20
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