katholt/sonneityping: v20210201
Holt, KE
; Hawkey, J and Paranagama, K
(2021).
katholt/sonneityping: v20210201.
[Dataset].
Zenodo.
https://doi.org/10.5281/zenodo.4609812
; Hawkey, J and Paranagama, K
(2021).
katholt/sonneityping: v20210201.
[Dataset].
Zenodo.
https://doi.org/10.5281/zenodo.4609812
A Python script to parse Mykrobe predict results for Shigella sonnei. Mykrobe v0.9.0+ can identify input genomes as S. sonnei, assign those identified as S. sonnei to hierarchical genotypes based on detection of single nucleotide variants (SNVs; defined in the file alleles.txt), and report known mutations in the quinolone-resistance determining region (QRDR) of genes gyrA (S83L, D87G, D87Y) and parC (S80I).
Keywords
Mykrobe; Shigella sonnei| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Software Python |
| Capture method | Other |
| Date | 17 March 2021 |
| Language(s) of written materials | English |
| Creator(s) |
Holt, KE; Hawkey, J and Paranagama, K
|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 07 Aug 2021 10:39 |
| Last Modified | 07 Aug 2021 10:39 |
| Publisher | Zenodo |
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