katholt/sonneityping: v20210201

Holt, KEORCID logo, Hawkey, JORCID logo and Paranagama, K (2021). katholt/sonneityping: v20210201. [Dataset]. Zenodo. https://doi.org/10.5281/zenodo.4609812
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A Python script to parse Mykrobe predict results for Shigella sonnei. Mykrobe v0.9.0+ can identify input genomes as S. sonnei, assign those identified as S. sonnei to hierarchical genotypes based on detection of single nucleotide variants (SNVs; defined in the file alleles.txt), and report known mutations in the quinolone-resistance determining region (QRDR) of genes gyrA (S83L, D87G, D87Y) and parC (S80I).

Keywords

Mykrobe; Shigella sonnei

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