katholt/sonneityping: v20210201
Holt, KE
, Hawkey, J
and Paranagama, K
(2021).
katholt/sonneityping: v20210201.
[Dataset].
Zenodo.
https://doi.org/10.5281/zenodo.4609812
A Python script to parse Mykrobe predict results for Shigella sonnei. Mykrobe v0.9.0+ can identify input genomes as S. sonnei, assign those identified as S. sonnei to hierarchical genotypes based on detection of single nucleotide variants (SNVs; defined in the file alleles.txt), and report known mutations in the quinolone-resistance determining region (QRDR) of genes gyrA (S83L, D87G, D87Y) and parC (S80I).
Keywords
Mykrobe, Shigella sonneiItem Type | Dataset |
---|---|
Capture method | Other |
Date | 17 March 2021 |
Language(s) of written materials | English |
Creator(s) |
Holt, KE |
LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019) |
Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
Date Deposited | 07 Aug 2021 10:39 |
Last Modified | 07 Aug 2021 10:39 |
Publisher | Zenodo |
Explore Further
- Data record - Zenodo (Online Data Resource)
- Github (Data)
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- Data record - Zenodo (Online Data Resource)
- Github (Data)
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ORCID: https://orcid.org/0000-0003-3949-2471
ORCID: https://orcid.org/0000-0001-9661-5293