Kleborate v2.0.0

Holt, KEORCID logo, Lam, MORCID logo and Wick, RORCID logo (2020). Kleborate v2.0.0. [Dataset]. Zenodo. https://doi.org/10.5281/zenodo.4923014
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Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for: MLST sequence type; species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.); ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb), salmochelin (iro), hypermucoidy (rmpA); virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2); antimicrobial resistance determinants: acquired genes, SNPs, gene truncations and intrinsic β-lactamases; K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive. This release (v2.0.0) is the one used for the manuscript describing Kleborate: Lam et al, 2021, Nature Communications. For documentation and developments see https://github.com/katholt/Kleborate

Keywords

Klebsiella pneumoniae; Klebsiella pneumoniae species complex

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