Data for: "Kankasha in Kassala: a prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan"
Bower, H
, el Karsany, M, Adam, Abd Alhadi Adam Hussein, Idriss, MI, Alzain, MA, Alfakiyousif, MEA, Mohamed, R, Mahmoud, I, Albadri, O, Mahmoud, SAA, Abdalla, OI, Eldigail, M, Elagib, N, Arnold, U, Gutierrez8, B, Pybus, OG, Carter, DP, Pullan, ST, Jacob, ST, Abdallah, TM, Gannon, B and Fletcher, TE
(2021).
Data for: "Kankasha in Kassala: a prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan".
[Dataset].
London School of Hygiene & Tropical Medicine, London, United Kingdom.
10.17037/DATA.00002018.
, el Karsany, M, Adam, Abd Alhadi Adam Hussein, Idriss, MI, Alzain, MA, Alfakiyousif, MEA, Mohamed, R, Mahmoud, I, Albadri, O, Mahmoud, SAA, Abdalla, OI, Eldigail, M, Elagib, N, Arnold, U, Gutierrez8, B, Pybus, OG, Carter, DP, Pullan, ST, Jacob, ST, Abdallah, TM, Gannon, B and Fletcher, TE
(2021).
Data for: "Kankasha in Kassala: a prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan".
[Dataset].
London School of Hygiene & Tropical Medicine, London, United Kingdom.
10.17037/DATA.00002018.
This collection contains research outputs associated with “Kankasha” in Kassala, a prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan. The collection contains a quantitative dataset, survey questionnaires, protocols and consent forms associated with the study. Anonymised data may be requested for use in ethically approved research only.
Keywords
Chikungunya, Clinical presentation, Genetic sequencing, Diagnostics, Sudan, Chikungunya infection, Kankasha, CHIKV| Item Type | Dataset |
|---|---|
| Description of data capture | The study was a prospective hospital-based observational cohort of consecutive patients presenting to the Kassala Teaching Hospital medical and paediatrics outpatient departments between 10th and 16th October 2018. Recruitment criteria were individuals of any age or sex with symptoms consistent with the KTH case definition for Chikungunya, namely history of fever or a measured fever of >37.5oC (tympanic), and at least three of the following clinical features: headache, anorexia, lethargy, aching muscles or joints, breathing difficulties, vomiting, diarrhoea, stomach pain, difficulty swallowing, and hiccups, or bleeding of any kind. Patients with a positive malaria RDT were enrolled if they fit the study syndrome in case of co-infection. Participants were enrolled at presentation and blood samples taken immediately. Epidemiological information, clinical symptoms at presentation and subsequent laboratory results were recorded on standardised pro-formas (Supporting Information 1). The follow-up component took place 70-120 days after enrolment (Jan-Feb 2019) depending on the availability of participants. Adults who responded to phone follow-up provided convalescent samples and completed the WHO-validated Routine Assessment of Patient Index Data 3 (RAPID3) disability and pain survey.30 Children were not asked to return due to common reluctance to allow blood-draw from healthy children, but outcome and duration of hospital stay were confirmed with parents by phone. All contactable participants were given their PCR test results. |
| Capture method | Questionnaire, Field observation, Lab observation |
| Collection Period |
From To 10 October 2018 16 October 2018 |
| Date | 21 January 2021 |
| Geographical area covered (offline during plugin upgrade) |
North Latitude East Longitude South Latitude West Longitude 15.7337 36.7222 15.3349 36.1358 |
| Language(s) of written materials | Arabic, English |
| Creator(s) |
Bower, H, el Karsany, M, Adam, Abd Alhadi Adam Hussein, Idriss, MI, Alzain, MA, Alfakiyousif, MEA, Mohamed, R, Mahmoud, I, Albadri, O, Mahmoud, SAA, Abdalla, OI, Eldigail, M, Elagib, N, Arnold, U, Gutierrez8, B, Pybus, OG, Carter, DP, Pullan, ST, Jacob, ST, Abdallah, TM, Gannon, B and Fletcher, TE
|
| Associated roles | el Karsany, M (Principal Investigator), Fletcher, TE (Principal Investigator) and Gannon, B (Co-Investigator) |
| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023) |
| Research Group | Uk Public Health Rapid Support Team |
| Participating Institutions | UK Public Health Rapid Support Team, London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Funders |
Project Funder Grant Number Funder URI |
| Date Deposited | 01 Mar 2021 16:20 |
| Last Modified | 08 Jul 2021 12:49 |
| Publisher | London School of Hygiene & Tropical Medicine |
KAS_dataset.csv
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subject - Data
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lock - Restricted to Request access for all
- Data Sharing Agreement
- Available under Data Sharing Agreement
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info - Tabular dataset containing information collected on 142 patients who received treatment. Consult codebook for information
description - text/plain
- folder_info
- 46B
KAS_dataset_codebook.html
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subject - Documentation
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
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info - Codebook for KAS dataset
html - text/html
- folder_info
- 20kB
KAS_UserGuide.html
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subject - Documentation
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
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info - User guide for KAS dataset
html - text/html
- folder_info
- 8kB
CHKV_follow-up_form.docx
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subject - Study Instrument
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
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info - CHKV Follow-up Form (MS Word format)
description - application/vnd.openxmlformats-officedocument.wordprocessingml.document
- folder_info
- 52kB
CHKV_follow-up_form.pdf
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subject - Study Instrument
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
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info - CHKV Follow-up Form (PDF)
picture_as_pdf - application/pdf
- folder_info
- 230kB
UFOS_Case_Report_Form.pdf
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subject - Study Instrument
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
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info - Aetiology of severe undifferentiated febrile illness outbreaks in Sudan Case Report Form (v 21.12.17)
picture_as_pdf - application/pdf
- folder_info
- 870kB
UFOS_ConsentForm_adult.pdf
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subject - Documentation
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
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info - UFOS – Consent form for adult participants
picture_as_pdf - application/pdf
- folder_info
- 143kB
UFOS_ParticipantInfoSheet.pdf
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subject - Documentation
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
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info - UFOS – Participant Information Sheet
picture_as_pdf - application/pdf
- folder_info
- 267kB
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