https://doi.org/10.17037/DATA.00002018
A quantitative dataset that contains information collected on 142 patients who received treatment during the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan. The following codebook outlines the data variables collected by the study. Please direct all questions related to the interpretation of these variables to the data creators.
| Variable | Variable label | Answer code | Answer label |
| pin | Patient ID | ||
| sex | sex of patient | ||
| M | Male | ||
| F | Female | ||
| delay | Delay onset to presentation | ||
| preg | Is participant pregnant | ||
| Y | Yes | ||
| N | No | ||
| deliv | delivered in past 12 weeks | ||
| trav_loc1 | exposure location of travel | ||
| house | exposure: type of housing | ||
| toilet | exposure: HouseHold access to toilet | ||
| water | exposure: HouseHold access to water | ||
| hh_animal | Animals kept in household | ||
| Y | Yes | ||
| N | No | ||
| adm_temp | temperature at presentation | ||
| heartrate | Symptom at pres : heart rate | ||
| resprate | Symptom at presentation: respiratory rate | ||
| bp_sys | bp_systolic at presentation | ||
| bp_diast | bp_diastolic at presentation | ||
| othsym1 | Symptom at presentation: other Symptoms | ||
| haem1 | Biochem results: haemoglobin | ||
| wbc1 | Biochem result: wbc | ||
| plate1 | Biochem result: platelets | ||
| hct1 | Biochem results: haematocrit | ||
| no1 | Biochem result: nitrogen oxide | ||
| lo1 | Biochem result : LO | ||
| urea1 | Biochem result: urea | ||
| creat1 | Biochem result: creatinine | ||
| bili1 | Biochem result: bilirubin | ||
| ast1 | Biochem results: AST | ||
| alt1 | Biochem result: ALT | ||
| outcome | outcome for all followed up participa... | ||
| maltype | type of malaria | ||
| den_ct | Linear CT for DV | ||
| fup_sample | Sample given at Follow-up | ||
| fup_admdays | Follow-up variable: Number of days admitted - adult | ||
| fup_diab | Follow-up med hist: diabetes | ||
| fup_hypert | Follow-up med hist: hypertension | ||
| fup_overweight | Follow-up med hist: overweight | ||
| fup_cvd | Follow-up med hist: cvd | ||
| fup_respcondit | Follow-up med hist: respiratory condition | ||
| fup_rheumat | Follow-up med hist: rheumatological condition | ||
| fup_osteoarth | Follow-up med hist: osteoarthritis | ||
| fup_othmed | Follow-up med hist: other medical conditions | ||
| fup_arthral | Symptom at Follow-up : arthralgia | ||
| fup_fever | Symptom at Follow-up: fever | ||
| fup_myal | Symptom at Follow-up : myalgia | ||
| fup_head | Symptom at Follow-up : headache | ||
| fup_rash | Symptom at Follow-up: rash | ||
| fup_respsymp | Symptom at Follow-up: respiratory Symptoms | ||
| fup_gastro | Symptom at Follow-up : gastrointestinal Symptoms | ||
| fup_haem | Symptom at Follow-up : haemorrhagic Symptoms | ||
| fup_dizzy | Symptom at Follow-up: dizzy | ||
| fup_confus | Symptom at Follow-up : confusion | ||
| fup_sleep | Symptom at Follow-up: sleep problems | ||
| fup_othprob | Symptom at Follow-up: other problems | ||
| fup_shoulder | Follow-up variable: pain shoulder | ||
| fup_elbow | Follow-up variable: pain elbow | ||
| fup_hip | Follow-up variable: pain hip | ||
| fup_knee | Follow-up variable: pain knee | ||
| fup_ankle | Symptom at Follow-up : pain ankle | ||
| fup_wrist | Follow-up variable: pain wrist | ||
| fup_feet | Follow-up variable: pain feet | ||
| fup_finger | Follow-up variable: pain finger | ||
| fup_toes | Follow-up variable: pain toes | ||
| fup_spine | Follow-up variable: pain spine | ||
| fup_severity | Follow-up variable: perception of pain bet... | ||
| fup_para | Follow-up Variable: taking paracetamol | ||
| fup_nsaid | Follow-up Variable: taking NSAID | ||
| fup_corticost | Follow-up Variable: taking corticosteroid | ||
| fup_absent | Follow-up variable: absent from work | ||
| fup_dress | Follow-up variable: Rap3 : difficulty dres... | ||
| fup_outbed | Follow-up variable: Rap3 : difficulty gett... | ||
| fup_liftcup | Follow-up variable: Rap3 : difficulty lift... | ||
| fup_walkout | Follow-up variable: Rap3 : difficulty walk... | ||
| fup_washdry | Follow-up variable: Rap3 : difficulty wash... | ||
| fup_bend | Follow-up variable: Rap3 difficulty bending | ||
| fup_faucet | Follow-up variable: Rap3 : diffciulty turn... | ||
| fup_inout | Follow-up variable: Rap3 : difficulty gett... | ||
| fup_walk2m | Follow-up variable: Rap3 : difficulty walk... | ||
| fup_recreat | Follow-up variable: Rap3 : difficulty doin... | ||
| fup_gdsleep | Follow-up variable: Rap3 : difficulty gett... | ||
| fup_anxiet | Symptom at Follow-up : anxiety | ||
| fup_depress | Symptom at Follow-up: depression | ||
| fup_pain | Follow-up variable: Rap3 linear pain score | ||
| fup_howwell | Follow-up variable : Rap3 wellbeing score | ||
| fup_rap3 | Follow-up variable: Rap3 linear score | ||
| fup_r3categ | Follow-up variable: Rap3 categories | ||
| adm_fup | Administration follow-up | ||
| agegrp | Grouped age based on ageyr | ||
| occ | Re-grouped occupation | ||
| hhsize | Linear HouseHold size | ||
| hhgrp | Grouped HouseHold size | ||
| gathern | exposure: participate in large gather... | ||
| funeraln | exposure to funeral | ||
| cult_tradn | exposure : participation in cultural ... | ||
| corpsen | exposure: contact with corpse | ||
| exp_illn | exposure to ill person | ||
| exp_bloodn | exposure: to blood | ||
| baseern | exposure: visit to trad med prac | ||
| cown | exposure: contact with cow | ||
| sheep_goatn | expsoure to sheep/goat | ||
| cameln | exposure to camels | ||
| horsen | exposure to horse | ||
| birdn | exposure: bords/fowls | ||
| ratsn | exposure to rats | ||
| dogn | exposure to dog | ||
| catn | exposure to cats | ||
| monkeyn | exposure to monkey | ||
| exp_wildn | exposure to wild meat | ||
| tickn | exposure to ticks | ||
| mosquiton | exposure: mosquito bite | ||
| traveln | exposure: travel | ||
| chkpcr | Result of CHKV pcr: pos/neg | ||
| dvpcr | Result of DV PCR : pos/neg | ||
| chkctgp | Grouped CT count CHKV | ||
| combi | CHKV/DV coinfected | ||
| malresn | Result of malaria test | ||
| hist_fevern | Symptom at presentation: hist_fever | ||
| dehydrn | Symptom at presentation: dehydration | ||
| albuminn | Biochem result: Albumin | ||
| anybleedn | Symptom at presentation: any bleeding | ||
| bl_gumn | Symptom at presentation: bleeding from gum | ||
| bl_mouthn | Symptom at presentation: bleeding from mouth | ||
| bl_nosen | Symptom at presentation: bleeding from nose | ||
| bl_eyen | Symptom at presentation: bleeding from eye | ||
| bl_earn | Symptom at presentation: bleeding from ear | ||
| bl_petecn | Symptom at presentation: petechiae | ||
| bl_muscl_haemn | Symptom at presentation: haematoma in muscle | ||
| bl_coughn | Symptom at presentation: bloody cough | ||
| redbl_vomn | Symptom at presentation: red blood in vomit | ||
| brbl_vomn | Symptom at presentation: brown blood in ... | ||
| stool_redn | Symptom at presentation: blood in stool | ||
| malaenan | Symptom at presentation: bleeding malaena | ||
| bl_venen | Symptom at presentation: bleeding from veenpunc... | ||
| bl_urinen | Symptom at presentation: blood in urine | ||
| bl_vagn | Symptom at presentation: bleeding from vagine (... | ||
| headachen | Symptom at presentation: headache | ||
| fatiguen | Symptom at presentation: fatigue | ||
| musclen | Symptom at presentation: Muscle pain | ||
| jointn | Symptom at presentation: joint pain | ||
| vomitn | Symptom at presentation: vomiting | ||
| diarrn | Symptom at presentation: diarrhoea | ||
| swallown | Symptom at presentation: difficulty swallowing | ||
| sh_breathn | Symptom at presentation: shortness of breath | ||
| lossappn | Symptom at presentation: loss of appetite | ||
| abdpainn | abdpain at presentation | ||
| hiccn | Symptom at presentation: hiccups | ||
| conjuncn | Symptom at presentation: conjunctivitis | ||
| rashn | Symptom at presentation: rash | ||
| dizzyn | Symptom at presentation: dizziness | ||
| confusn | Symptom at presentation: confusion | ||
| seizuren | Symptom at presentation: seizure | ||
| lymphn | Symptom at presentation: lymphadopathy | ||
| coughn | Symptom at presentation: cough | ||
| throatn | Symptom at presentation: sore throat | ||
| jaundn | Symptom at presentation: jaundice | ||
| backpainn | Symptom at presentation : backpain | ||
| chest_painn | Symptom at presentation: chest_pain | ||
| min_bruisen | Symptom at presentation: minor bruising | ||
| maj_bruisen | Symptom at presentation: major bruising | ||
| weak | Symptom at presentation: lack of strength | ||
| fup60d | type of 60d Follow-up response | ||
| hospcare | Follow-up variable : admitted or discharge… | ||
| dayhosp | Number of of days admitted: adult & child | ||
| ad_ch | Adult/child breakdown whole sample | ||
| cigg2 | CHKV IgG2 | ||
| digm2 | DEnV IgGM2 | ||
| digg2 | DENV IgG2 | ||
| c_ct | chik_ct | ||
| c_igm1 | chik_igm1 | ||
| cigg1 | CHKV IgG1 | ||
| dv_ct | denv_ct | ||
| dv_igm1 | denv_igm1 | ||
| dv_igg1 | denv_igg1 |