klebgenomics/Kleborate: v2.5

Wick, R, Holt, KE, marlam89, kelwyres, Petit III, RA, Maranga, M, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T. 2024. klebgenomics/Kleborate: v2.5. [Online]. Zenodo. Available from: https://doi.org/10.5281/zenodo.13629280

Wick, R, Holt, KE, marlam89, kelwyres, Petit III, RA, Maranga, M, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T. klebgenomics/Kleborate: v2.5 [Internet]. Zenodo; 2024. Available from: https://doi.org/10.5281/zenodo.13629280

Wick, R, Holt, KE, marlam89, kelwyres, Petit III, RA, Maranga, M, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T (2024). klebgenomics/Kleborate: v2.5. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.13629280

Description

Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for: MLST sequence type; species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.); ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb); virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2); antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations; K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive.

Methods

Data capture method	Other
Date (Date published in a 3rd party system)	2 September 2024
Language(s) of written materials	English

People & Groups

Data Creators	Wick, R, Holt, KE, marlam89, kelwyres, Petit III, RA, Maranga, M, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T
LSHTM Faculty/Department	Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019)
Participating Institutions	University of Melbourne, Melbourne, Australia, Wyoming Public Health Laboratory, Wyoming, United States, London School of Hygiene & Tropical Medicine, London, United Kingom, Institut Pasteur, Paris, France, Karolinska University Hospital, Solna, Sweden, Monash University, Melbourne, Australia