Holt, KE, Dyson, ZA, Hawkey, J and flashton2003. 2024. typhoidgenomics/genotyphi. [Online]. Zenodo. Available from: https://doi.org/10.5281/zenodo.4707613
Holt, KE, Dyson, ZA, Hawkey, J and flashton2003. typhoidgenomics/genotyphi [Internet]. Zenodo; 2024. Available from: https://doi.org/10.5281/zenodo.4707613
Holt, KE, Dyson, ZA, Hawkey, J and flashton2003 (2024). typhoidgenomics/genotyphi. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4707613
Alternative Title
genotyphi
Description
This repository houses the GenoTyphi genotyping scheme for Salmonella Typhi. It also describes how to call genotypes, AMR and plasmid markers from Typhi whole-genome sequence reads using Mykrobe ('Typhi Mykrobe') and provides links to alternative tools for calling genotypes from reads or assemblies.
| Data capture method | Other |
|---|---|
| Date (Date published in a 3rd party system) | 30 September 2024 |
| Language(s) of written materials | English |
| Data Creators | Holt, KE, Dyson, ZA, Hawkey, J and flashton2003 |
|---|---|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 07 Feb 2022 10:05 |
|---|---|
| Last Modified | 03 Oct 2024 09:49 |
| Publisher | Zenodo |
