Paradis, E, Kamvar, ZN, Jombart, T, Brian, K and Frederic, M. 2020. pegas: Population and Evolutionary Genetics Analysis System. [Online]. Zenodo. Available from: http://doi.org/10.5281/zenodo.3647668
Paradis, E, Kamvar, ZN, Jombart, T, Brian, K and Frederic, M. pegas: Population and Evolutionary Genetics Analysis System [Internet]. Zenodo; 2020. Available from: http://doi.org/10.5281/zenodo.3647668
Paradis, E, Kamvar, ZN, Jombart, T, Brian, K and Frederic, M (2020). pegas: Population and Evolutionary Genetics Analysis System. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3647668
Description
Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.
Keywords
| Data capture method | Simulation |
|---|---|
| Date (Date published in a 3rd party system) | 6 February 2020 |
| Language(s) of written materials | English |
| Data Creators | Paradis, E, Kamvar, ZN, Jombart, T, Brian, K and Frederic, M |
|---|---|
| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 18 Feb 2020 14:14 |
|---|---|
| Last Modified | 08 Jul 2021 12:52 |
| Publisher | Zenodo |
