VCF Viewer (VARB)

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Preston, MD, Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, J, Nosten, F, Anderson, T and Clark, T. 2012. VCF Viewer (VARB). [Online]. London School of Hygiene & Tropical Medicine, London, United Kingdom. Available from: - http://pathogenseq.lshtm.ac.uk/

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Description

High throughput sequencing is generating large datasets that can be used provide important insights into genomic variation and biology. There is a need to visualize single nucleotide polymorphisms, insertions and deletions, and other structural variants from new sequence file formats. We have developed VarB software that can read in multi-sample VCF files, and visualize and critically assess contents and identify informative markers to discriminate between user-defined groups.

Published in a 3rd party system Date: 2012
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Data Creators(s): Preston, MD, Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, J, Nosten, F, Anderson, T and Clark, T
LSHTM Faculty/Department: Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology
Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology
Participating Institutions: London School of Hygiene & Tropical Medicine, London, United Kingdom

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