Holt, KE and Wyres, K. 2018. Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens. [Online]. University of Melbourne, Australia. Available from: https://doi.org/10.4225/49/5ac3670f83717
Holt, KE and Wyres, K. Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens [Internet]. University of Melbourne; 2018. Available from: https://doi.org/10.4225/49/5ac3670f83717
Holt, KE and Wyres, K (2018). Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens. [Data Collection]. University of Melbourne, Australia. https://doi.org/10.4225/49/5ac3670f83717
Description
This collection contains: (1) R code to parse data downloaded from NCBI to generate plots of genome size, genewise G+C content, AMR gene load and plasmid load for Gram negative opportunistic pathogens K. pneumoniae, E. coli, E. cloaceae, P. aeruginosa and A. baumannii. and (2) Results of querying the IMNGS 16S database (imngs.org) for the above species, and R code to plot the frequency of detection of each species in samples of different source types.
Keywords
| Data capture method | Experiment: Laboratory |
|---|---|
| Date (Date published in a 3rd party system) | 8 April 2018 |
| Language(s) of written materials | English |
| Data Creators | Holt, KE and Wyres, K |
|---|---|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology |
| Participating Institutions | University of Melbourne, Parkville VIC 3010, Australia |
| Date Deposited | 09 Jan 2019 10:49 |
|---|---|
| Last Modified | 08 Jul 2021 12:50 |
| Publisher | University of Melbourne |
