A

Andreu, N, Phelan, J, de Sessions, PF, Cliff, JM, Clark, T and Hibberd, M (2017). Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. [Data Collection]. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88801

C

Cortes, T, Schubert, OT, Banaei-Esfahani, A, Collins, BC, Aebersold, R and Young, DB (2017). Time course RNA-seq of Mycobacterium tuberculosis exposed to nitric oxide. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-5557/

D

Diez Benavente, E, Florez de Sessions, P, Moon, RW, Holder, AA, Blackman, MJ, Roper, C, Drakeley, CJ, Pain, A, Sutherland, CJ, Hibberd, ML, Campino, S and Clark, TG (2017). Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pgen.1007008

Domman, D, Quilici, M, Dorman, MJ, Njamkepo, E, Mutreja, A, Mather, AE, Delgado, G, Morales-Espinosa, R, Grimont, PAD, Lizárraga-Partida, ML, Bouchier, C, Aanensen, DM, Kuri-Morales, P, Tarr, CL, Dougan, G, Parkhill, J, Campos, J, Cravioto, A, Weill, F and Thomson, NR (2017). Integrated view of Vibrio cholerae in the Americas. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.5427253.v1

K

Kallonen, T, Brodrick, HJ, Harris, SR, Corander, J, Brown, NM, Martin, V, Peacock, SJ and Parkhill, J (2017). Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.1101/gr.216606.116

M

Messenger, LA, Shililu, J, Irish, SR, Anshebo, GY, Tesfaye, AG, Ye-Ebiyo, Y, Chibsa, S, Dengela, D, Dissanayake, G, Kebede, E, Zemene, E, Asale, A, Yohannes, M, Taffese, HS, George, K, Fornadel, C, Seyoum, A, Wirtz, RA and Yewhalaw, D (2017). MOESM1 of Insecticide resistance in Anopheles arabiensis from Ethiopia (2012-2016): a nationwide study for insecticide resistance monitoring. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3934171_D1

Murray, L (2017). Data for: "Investigations into the within-host genomic diversity and phenotypic variation of Plasmodium falciparum". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.202.

P

Perrin, A, Larsonneur, E, Nicholson, AC, Edwards, DJ, Gundlach, KM, Whitney, AM, Gulvik, CA, Bell, ME, Rendueles, O, Cury, J, Hugon, P, Clermont, D, Enouf, V, Loparev, V, Juieng, P, Monson, T, Warshauer, D, Elbadawi, LI, Walters, MS, Crist, MB, Noble-Wang, J, Borlaug, G, Rocha, EPC, Criscuolo, A, Touchon, M, Davis, JP, Holt, KE, McQuiston, JR and Brisse, S (2017). Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain. [Data Collection]. Nature Communications. https://doi.org/10.1038/ncomms15483

R

Ruis, C, Roy, S, Brown, JR, Allen, DJ, Goldstein, RA and Breuer, J (2017). The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0179572

S

Sabatini, R, Stortz, JA, Serafim, TD, Alsford, S, Wilkes, J, Fernandez-Cortes, F, Hamilton, G, Briggs, E, Lemgruber, L, Horn, D, Mottram, JC and McCulloch, R (2017). Genome-wide and protein kinase-focused RNAi screens reveal conserved and novel damage response pathways in Trypanosoma brucei. [Data Collection]. Figshare. https://doi.org/10.1371/journal.ppat.1006477

T

The, HC, Florez de Sessions, P, Jie, S, Pham Thanh, D, Thompson, CN, Nguyen Ngoc Minh, C, Chu, CW, Tran, T, Thomson, NR, Thwaites, GE, Rabaa, MA, Hibberd, M and Baker, S (2017). Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children. [Data Collection]. Gut microbes. https://doi.org/10.1080/19490976.2017.1361093

W

Weill, F, Domman, D, Njamkepo, E, Tarr, C, Rauzier, J, Fawal, N, Keddy, KH, Salje, H, Moore, S, Mukhopadhyay, AK, Bercion, R, Luquero, FJ, Ngandjio, A, Dosso, M, Monakhova, E, Garin, B, Bouchier, C, Pazzani, C, Mutreja, A, Grunow, R, Sidikou, F, Bonte, L, Breurec, S, Damian, M, Njanpop-Lafourcade, B, Sapriel, G, Page, A, Hamze, M, Henkens, M, Chowdhury, G, Mengel, M, Koeck, J, Fournier, J, Dougan, G, Grimont, PAD, Parkhill, J, Holt, KE, Piarroux, R, Ramamurthy, T, Quilici, M and Thomson, NR (2017). Genomic history of the seventh pandemic of cholera in Africa. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.5314822.v3