A

Abbott, S (2023). seabbs/badtobetter: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7799448

Abbott, S, Russell, TW, Hellewell, J and Kucharski, AJ (2023). thimotei/legacy_ct_modelling: Final version. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10223417

E

Etienne, RS, Valente, L, Phillimore, AB, Haegeman, B, Lambert, JW, Santos Neves, P, Xie, S, Bilderbeek, RJ, Hildenbrandt, H, Hauffe, T, Laudanno, G, Kristensen, N and Scherrer, R (2023). DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=DAISIE

H

Henderson, AD, Butler-Cole, BF, Wiedemann, M, Evans, D and Smith, R (2023). opensafely/openprompt-vaccine-long-covid. [Data Collection]. GitHub. https://github.com/opensafely/openprompt-vaccine-long-covid

K

Kapulu, MC, Muthumbi, E, Otieno, E, Rossi, O, Ferruzzi, P, Necchi, F, Acquaviva, A, Martin, LB, Orindi, B, Mwai, K, Mwanzu, A, Bigogo, GM, Verani, JR, Mbae, C, Nyundo, C, Agoti, CN, Nakakana, UN, Conti, V, Bejon, P, Kariuki, S, Scott, JAG, Micoli, F and Podda, A (2023). Replication Data for: Age-dependent acquisition of IgG antibodies to Shigella serotypes – a retrospective analysis of sero-prevalence in Kenyan children. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/F5AV5G

L

London School of Hygiene & Tropical Medicine (2023). Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB60532

N

Nightingale, E (2023). esnightingale/vl-collection-methods-xm. [Data Collection]. GitHub. https://github.com/esnightingale/vl-collection-methods-xm

P

Pearson, CAB and Hladish, T (2023). tjhladish/AbcSmc. [Data Collection]. Github. https://github.com/tjhladish/AbcSmc

Pearson, CAB, Hladish, T, Pillai, AN and Chao, D (2023). tjhladish/dengue-abm. [Data Collection]. Github. https://github.com/tjhladish/dengue-abm

R

Richards, AS (2023). alexandrasrichards/natural_history_tb_disease. [Data Collection]. GitHub. https://github.com/alexandrasrichards/natural_history_tb_disease

Russell, TW (2023). Fits and plot data for the paper: "Combined analyses of within-host SARS-CoV-2 viral kinetics and information on past exposures to the virus in a human cohort identifies intrinsic differences of Omicron and Delta variants". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10223385

S

Sherratt, K, Abbott, S, Carnegie, A and Liu, Y (2023). Improving modelling for epidemic responses: reflections. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/4JNCB