Abbott, S (2023). seabbs/badtobetter: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7799448

Abbott, S, Russell, TW, Hellewell, J and Kucharski, AJ (2023). thimotei/legacy_ct_modelling: Final version. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10223417

Etienne, RS, Valente, L, Phillimore, AB, Haegeman, B, Lambert, JW, Santos Neves, P, Xie, S, Bilderbeek, RJ, Hildenbrandt, H, Hauffe, T, Laudanno, G, Kristensen, N and Scherrer, R (2023). DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=DAISIE

Henderson, AD, Butler-Cole, BF, Wiedemann, M, Evans, D and Smith, R (2023). opensafely/openprompt-vaccine-long-covid. [Data Collection]. GitHub. https://github.com/opensafely/openprompt-vaccine-long-covid

Kapulu, MC, Muthumbi, E, Otieno, E, Rossi, O, Ferruzzi, P, Necchi, F, Acquaviva, A, Martin, LB, Orindi, B, Mwai, K, Mwanzu, A, Bigogo, GM, Verani, JR, Mbae, C, Nyundo, C, Agoti, CN, Nakakana, UN, Conti, V, Bejon, P, Kariuki, S, Scott, JAG, Micoli, F and Podda, A (2023). Replication Data for: Age-dependent acquisition of IgG antibodies to Shigella serotypes – a retrospective analysis of sero-prevalence in Kenyan children. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/F5AV5G

London School of Hygiene & Tropical Medicine (2023). Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB60532

Nightingale, E (2023). esnightingale/vl-collection-methods-xm. [Data Collection]. GitHub. https://github.com/esnightingale/vl-collection-methods-xm

Pearson, CAB and Hladish, T (2023). tjhladish/AbcSmc. [Data Collection]. Github. https://github.com/tjhladish/AbcSmc

Pearson, CAB, Hladish, T, Pillai, AN and Chao, D (2023). tjhladish/dengue-abm. [Data Collection]. Github. https://github.com/tjhladish/dengue-abm

Richards, AS (2023). alexandrasrichards/natural_history_tb_disease. [Data Collection]. GitHub. https://github.com/alexandrasrichards/natural_history_tb_disease

Russell, TW (2023). Fits and plot data for the paper: "Combined analyses of within-host SARS-CoV-2 viral kinetics and information on past exposures to the virus in a human cohort identifies intrinsic differences of Omicron and Delta variants". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10223385

Sherratt, K, Abbott, S, Carnegie, A and Liu, Y (2023). Improving modelling for epidemic responses: reflections. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/4JNCB