Items where Data Creator is Brady, Oliver J."
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Roell, Y, Pezzi, L, Lozano-Parra, A, Olson, D, Messina, J, Quandelacy, T, Drexler, JF, Brady, O, Karimzadeh, M and Jaenisch, T (2024). S1 Table for "Assessing vulnerability for future Zika virus outbreaks using seroprevalence data and environmental suitability maps". [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0012017.s001
Lim, A and Brady, OJ (2024). OpenDengue/master-repo. [Data Collection]. GitHub. https://github.com/OpenDengue/master-repo
Brady, OJ (2024). obrady/CATI_Vietnam. [Data Collection]. Github. https://github.com/obrady/CATI_Vietnam
Ashall, J, Shah, S, Biggs, JR, Chang, JR, Jafari, Y, Brady, OJ, Mai, HK, Lien, LT, Do Thai, H, Nguyen, HAT, Anh, DD, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Rasschaert, F, Van Wesenbeeck, L, Yoshida, L, Hafalla, JCR, Hue, S and Hibberd, ML (2023). Dengue virus type 4 isolate DET-P-0428-1 polyprotein (POLY) gene, complete cds; and sfRNA2 lncRNA gene, partial sequence. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/nuccore/OQ427062
Ashall, J, Shah, S, Biggs, JR, Chang, JR, Jafari, Y, Brady, OJ, Mai, HK, Lien, LT, Do Thai, H, Nguyen, HAT, Anh, DD, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Rasschaert, F, Van Wesenbeeck, L, Yoshida, L, Hafalla, JCR, Hue, S and Hibberd, ML (2023). Dengue virus type I isolate DEN-P-1098-1 polyprotein (POLY) gene, partial cds. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/nuccore/OQ426566.1/
Colón-González, FDJ, Gibb, R, Khan, K, Watts, A, Lowe, R and Brady, OJ (2022). Projecting the future incidence and burden of dengue in Southeast Asia. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/85XWQ
Biggs, J, Sy, AK, Ashall, J, Santoso, MS, Brady, OJ, Reyes, MAJ, Quinones, MA, Jones-Warner, W, Tandoc, AO, Sucaldito, NL, Huynh, KM, Le, TL, Hung, DT, Nguyen, HAT, Dang, DA, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Menten, J, Rasschaert, F, Van Wesenbeeck, L, Masyeni, S, Haryanto, S, Yohan, B, Cutiongco-de la Paz, E, Yoshida, L, Hue, S, Capeding, MRZ, Padilla, CD, Sasmono, RT, Hafalla, JCR and Hibberd, ML (2022). Demographic characteristics of the reporting study population at enrolment. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010365.s002
Biggs, J, Sy, AK, Ashall, J, Santoso, MS, Brady, OJ, Reyes, MAJ, Quinones, MA, Jones-Warner, W, Tandoc, AO, Sucaldito, NL, Huynh, KM, Le, TL, Hung, DT, Nguyen, HAT, Dang, DA, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Menten, J, Rasschaert, F, Van Wesenbeeck, L, Masyeni, S, Haryanto, S, Yohan, B, Cutiongco-de la Paz, E, Yoshida, L, Hue, S, Capeding, MRZ, Padilla, CD, Sasmono, RT, Hafalla, JCR and Hibberd, ML (2022). Sensitivity (95%CI) of NS1 RDTs in capturing DENV1-4 infections stratified by immune status among patients from Vietnam (N:1,217). [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010365.s003
Biggs, JR, Sy, AK, Ashall, J, Santoso, MS, Brady, OJ, Reyes, MAJ, Quinones, MA, Jones-Warner, W, Tandoc, AO, Sucaldito, NL, Huynh, KM, Le, TL, Hung, DT, Nguyen, HAT, Dang, DA, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Menten, J, Rasschaert, F, Van Wesenbeeck, L, Masyeni, S, Haryanto, S, Yohan, B, Cutiongco-de la Paz, E, Yoshida, L, Hue, S, Capeding, MRZ, Padilla, CD, Sasmono, RT, Hafalla, JCR and Hibberd, ML (2022). A summary of data collected from suspected dengue patients included in the study population from Indonesia, Vietnam and the Philippines. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010365.s001
Colón-González, FJ, Soares Bastos, L, Hofmann, B, Hopkin, A, Harpham, Q, Crocker, T, Amato, R, Ferrario, I, Moschini, F, James, S, Malde, S, Ainscoe, E, Sinh Nam, V, Quang Tan, D, Duc Khoa, N, Harrison, M, Tsarouchi, G, Lumbroso, D, Brady, OJ and Lowe, R (2021). R code for the paper "Probabilistic seasonal dengue forecasting in Vietnam: A modelling study using superensembles". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4740093
Candido, DS, Claro, IM, de Jesus, JG, Souza, WM, Moreira, FRR, Dellicour, S, Mellan, TA, du Plessis, L, Pereira, RHM, Sales, FCS, Manuli, ER, Thézé, J, Almeida, L, Menezes, MT, Voloch, CM, Fumagalli, MJ, Coletti, TM, da Silva, CAM, Ramundo, MS, Amorim, MR, Hoeltgebaum, HH, Mishra, S, Gill, MS, Carvalho, LM, Buss, LF, Prete, CA, Ashworth, J, Nakaya, HI, Peixoto, PS, Brady, OJ, Nicholls, SM, Tanuri, A, Rossi, Átila D., Braga, CK, Gerber, AL, de C. Guimarães, AP, Gaburo, N, Alencar, CS, Ferreira, AC, Lima, CX, Levi, JE, Granato, C, Ferreira, GM, Francisco, RS, Granja, F, Garcia, MT, Moretti, ML, Perroud, MW, Castiñeiras, Terezinha M. P. P., Lazari, CS, Hill, SC, de Souza Santos, AA, Simeoni, CL, Forato, J, Sposito, AC, Schreiber, AZ, Santos, MNN, de Sá, CZ, Souza, RP, Resende-Moreira, LC, Teixeira, MM, Hubner, J, Leme, PAF, Moreira, RG, Nogueira, ML, Ferguson, NM, Costa, SF, Proenca-Modena, JL, Vasconcelos, ATR, Bhatt, S, Lemey, P, Wu, C, Rambaut, A, Loman, NJ, Aguiar, RS, Pybus, OG, Sabino, EC and Faria, NR (2020). Data from: Evolution and epidemic spread of SARS-CoV-2 in Brazil. [Data Collection]. Dryad. http://doi.org/10.5061/dryad.rxwdbrv5z
Candido, DS, Claro, IM, de Jesus, JG, Souza, WM, Moreira, FRR, Dellicour, S, Mellan, TA, du Plessis, L, Pereira, RHM, Sales, FCS, Manuli, ER, Thézé, J, Almeida, L, Menezes, MT, Voloch, CM, Fumagalli, MJ, Coletti, TM, da Silva, CAM, Ramundo, MS, Amorim, MR, Hoeltgebaum, HH, Mishra, S, Gill, MS, Carvalho, LM, Buss, LF, Prete, CA, Ashworth, J, Nakaya, HI, Peixoto, PS, Brady, OJ, Nicholls, SM, Tanuri, A, Rossi, Átila D., Braga, CK, Gerber, AL, de C. Guimarães, AP, Gaburo, N, Alencar, CS, Ferreira, AC, Lima, CX, Levi, JE, Granato, C, Ferreira, GM, Francisco, RS, Granja, F, Garcia, MT, Moretti, ML, Perroud, MW, Castiñeiras, Terezinha M. P. P., Lazari, CS, Hill, SC, de Souza Santos, AA, Simeoni, CL, Forato, J, Sposito, AC, Schreiber, AZ, Santos, MNN, de Sá, CZ, Souza, RP, Resende-Moreira, LC, Teixeira, MM, Hubner, J, Leme, PAF, Moreira, RG, Nogueira, ML, Ferguson, NM, Costa, SF, Proenca-Modena, JL, Vasconcelos, ATR, Bhatt, S, Lemey, P, Wu, C, Rambaut, A, Loman, NJ, Aguiar, RS, Pybus, OG, Sabino, EC and Faria, NR (2020). Evolution and epidemic spread of SARS-CoV-2 in Brazil. [Data Collection]. Science. https://doi.org/10.1126/science.abd2161
Brady, OJ and Bastos, L (2019). Code for simulating release of Wolbachia mosquitoes in Indonesia and assessing their cost effectiveness in different places over time. [Data Collection]. Github. https://github.com/obrady/Wolbachia_CE/
Brady, OJ and Bastos, L (2019). obrady/Wolbachia_CE. [Data Collection]. Github. https://github.com/obrady/Wolbachia_CE/
O'reilly, K, Hendrickx, E, Kharisma, DD, Wilastonegoro, NN, Carrington, LB, Elyazar, IRF, Kucharsk, AJ, Lowe, R, Flasche, S, Pigott, DM, Reiner Jr, RC, Edmunds, J, Hay, SI, Yakob, L, Shepard, DS and Brady, O (2019). Data and code from: Estimating the burden of dengue and the impact of release of wMel Wolbachia infected mosquitoes in Indonesia: a modelling study. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8243168.v1
Messina, JP, Brady, OJ, Golding, N, Kraemer, MU, Wint, GRW, Ray, SE, Pigott, DM, Shearer, FM, Johnson, K, Earl, L, Marczak, LB, Shirude, S, Davis Weaver, N, Gilbert, M, Velayudhan, R, Jones, P, Jaenisch, T, Scott, TW, Reiner Jr, RC and Hay, SI (2019). The current and future global distribution and population at risk of dengue. [Data Collection]. Nature Microbiology. https://doi.org/10.1038/s41564-019-0476-8
Brady, OJ (2018). obrady/Brazil_microcepahly_analysis_public. [Data Collection]. Github. https://github.com/obrady/Brazil_microcepahly_analysis_public
Brady, OJ (2018). Microcephaly and potential exposure data in Brazil 2015-2017. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.7359197.v1
Kucharski, AJ, Kama, M, Watson, CH, Aubry, M, Funk, S, Henderson, AD, Brady, OJ, Vanhomwegen, J, Manuguerra, J, Lau, CL, Edmunds, WJ, Aaskov, J, Nilles, EJ, Cao-Lormeau, V, Hue, S and Hibberd, ML (2018). adamkucharski/fiji-denv3-2014. [Data Collection]. Github. https://github.com/adamkucharski/fiji-denv3-2014
Shearer, FM, Moyes, CL, Pigott, DM, Brady, OJ, Marinho, F, Deshpande, A, Longbottom, J, Browne, AJ, Kraemer, MUG, O'reilly, KM, Hombach, J, Yactayo, S, de Araújo, VEM, da Nóbrega, AA, Mosser, JF, Stanaway, JD, Lim, SS, Hay, SI, Golding, N and Reiner, RC (2018). Data from: Global yellow fever vaccination coverage from 1970 to 2016: an adjusted retrospective analysis. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.5ps8j
Shearer, FM, Huang, Z, Weiss, DJ, Wiebe, A, Gibson, HS, Battle, KE, Pigott, DM, Brady, OJ, Putaporntip, C, Jongwutiwes, S, Lau, YL, Manske, M, Amato, R, Elyazar, IRF, Vythilingam, I, Bhatt, S, Gething, PW, Singh, B, Golding, N, Hay, SI and Moyes, CL (2016). Database of Plasmodium knowlesi infections recorded in humans, macaque reservoirs and vectors. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004915.s002
Kraemer, MUG, Sinka, ME, Duda, KA, Mylne, A, Shearer, FM, Brady, OJ, Messina, JP, Barker, CM, Moore, CG, Carvalho, RG, Coelho, GE, Van Bortel, W, Hendrickx, G, Schaffner, F, Wint, GRW, Elyazar, IRF, Teng, H and Hay, SI (2015). Data from: The global compendium of Aedes aegypti and Ae. albopictus occurrence. [Data Collection]. Dryad Digital Repository. https://doi.org/10.5061/dryad.47v3c
Pigott, DM, Bhatt, S, Golding, N, Duda, KA, Battle, KE, Brady, OJ, Messina, JP, Balard, Y, Bastien, P, Pratlong, F, Brownstein, JS, Freifeld, CC, Mekaru, SR, Gething, PW, George, DB, Myers, MF and Hay, SI (2015). Data from: Global distribution maps of the Leishmaniases. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.05f5h
Mylne, A, Brady, OJ, Huang, Z, Pigott, DM, Golding, N, Kraemer, MU and Hay, SI (2014). A comprehensive database of the geographic spread of past human Ebola outbreaks. [Data Collection]. Figshare. https://dx.doi.org/10.6084/m9.figshare.1168886
Pigott, DM, Golding, N, Mylne, A, Huang, Z, Henry, AJ, Weiss, DJ, Brady, OJ, Kraemer, MU, Smith, DL, Moyes, CL, Bhatt, S, Gething, PW, Horby, PW, Bogoch, II, Brownstein, JS, Mekaru, SR, Tatem, AJ, Khan, K and Hay, SI (2014). Source code for analysis of the zoonotic niche of Ebolavirus. [Data Collection]. GitHub, Inc.. https://doi.org/10.7554/eLife.04395.
Brady, OJ (2013). Model of adult Aedes aegypti survival/mortality at different temperatures. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.865034.v1
Brady, OJ (2013). Model of adult Aedes albopictus survival/mortality at different temperatures. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.865035.v1