Item Type Date Title No Grouping

Additional file 2 of Longitudinal analysis within one hospital in sub-Saharan Africa over 20 years reveals repeated replacements of dominant clones of Klebsiella pneumoniae and stresses the importance to include temporal patterns for vaccine design considerations. (2024) Heinz, Eva; Pearse, Oliver; Zuza, Allan; Bilima, Sithembile; Msefula, Chisomo; Musicha, Patrick; Siyabu, Patriciah; Tewesa, Edith; Graf, Fabrice E.; Lester, Rebecca; Lissauer, Samantha; Cornick, Jennifer; Lewis, Joseph M.; Kawaza, Kondwani; Thomson, Nicholas R.; Feasey, Nicholas A.

Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection. (2021) Dorman, Matthew; Thomson, Nicholas R.; Campos, Josefina

gbpA and chiA genes are not uniformly distributed amongst diverse Vibrio cholerae. (2021) Fennell, Thea G.; Blackwell, Grace A.; Thomson, Nicholas R.; Dorman, Matthew J.

Supporting data for "chiA and gbpA genes are not uniformly distributed amongst diverse Vibrio cholerae". (2021) Fennell, Thea G.; Blackwell, Grace A.; Thomson, Nicholas R.; Dorman, Matthew J.

Supporting data for "Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection". (2021) Dorman, Matthew; Thomson, Nicholas R.; Campos, Josefina

Supporting data for "Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae". (2020) Dorman, Matthew J.; Domman, Daryl; Poklepovich, Tomás; Tolley, Charlotte; Zolezzi, Gisella; Kane, Leanne; Viñas, María Rosa; Panagópulo, Marcela; Moroni, Miriam; Binsztein, Norma; Caffer, María Inés; Clare, Simon; Dougan, Gordon; Salmond, George P. C.; Parkhill, Julian; Campos, Josefina; Thomson, Nicholas R.

Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". (2020) Wyres, Kelly L.; Nguyen, To N. T.; Lam, Margaret M. C.; Judd, Louise M.; van Vinh Chau, Nguyen; Dance, David A. B.; Ip, Margaret; Karkey, Abhilasha; Ling, Clare L.; Miliya, Thyl; Newton, Paul N.; Lan, Nguyen Phu Huong; Sengduangphachanh, Amphone; Turner, Paul; Veeraraghavan, Balaji; Vinh, Phat Voong; Vongsouvath, Manivanh; Thomson, Nicholas R.; Baker, Stephen; Holt, Kathryn E.

Supporting data for 'High quality reference genomes for toxigenic and non-toxigenic Vibrio cholerae serogroup O139'. (2019) Dorman, Matthew J; Domman, Daryl; Uddin, Muhammad Ikhtear; Sharmin, Salma; Hassan Afrad, Mokibul; Begum, Yasmin Ara; Qadri, Firdausi; Thomson, Nicholas R

Additional materials from The history, genome and biology of NCTC 30: a non-pandemic Vibrio cholerae isolate from World War One. (2019) Dorman, Matthew J; Kane, Leanne; Domman, Daryl; Turnbull, Jake D; Cormie, Claire; Fazal, Mohammed-Abbas; Goulding, David A; Russell, Julie E; Alexander, Sarah; Thomson, Nicholas R.

Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages. (2019) Musicha, Patrick; Msefula, Chisomo L; Mather, Alison E; Chaguza, Chrispin; Cain, Amy K; Peno, Chikondi; Kallonen, Teemu; Khonga, Margaret; Denis, Brigitte; Gray, Katherine J; Heyderman, Robert S; Thomson, Nicholas R; Everett, Dean B; Feasey, Nicholas A

Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii. (2019) Boinett, Christine J.; Cain, Amy K.; Hawkey, Jane; Do Hoang, Nhu Tran; Khanh, Nhu Nguyen Thi; Thanh, Duy Pham; Dordel, Janina; Campbell, James I.; Lan, Nguyen Phu Huong; Mayho, Matthew; Langridge, Gemma C.; Hadfield, James; Chau, Nguyen Van Vinh; Thwaites, Guy E.; Parkhill, Julian; Thomson, Nicholas R.; Holt, Kathryn E.; Baker, Stephen

Dhaka household cholera dataset. (2018) Domman, Daryl; Chowdhury, Fahima; Khan, Ashraful I.; Dorman, Matthew J.; Mutreja, Ankur; Uddin, Muhammad Ikhtear; Paul, Anik; Begum, Yasmin A.; Charles, Richelle C.; Calderwood, Stephen B.; Bhuiyan, Taufiqur R.; Harris, Jason B.; LaRocque, Regina C.; Ryan, Edward T.; Qadri, Firdausi; Thomson, Nicholas R.

Integrated view of Vibrio cholerae in the Americas. (2017) Domman, Daryl; Quilici, Marie-Laure; Dorman, Matthew J.; Njamkepo, Elisabeth; Mutreja, Ankur; Mather, Alison E.; Delgado, Gabriella; Morales-Espinosa, Rosario; Grimont, Patrick A. D.; Lizárraga-Partida, Marcial Leonardo; Bouchier, Christiane; Aanensen, David M.; Kuri-Morales, Pablo; Tarr, Cheryl L.; Dougan, Gordon; Parkhill, Julian; Campos, Josefina; Cravioto, Alejandro; Weill, François-Xavier; Thomson, Nicholas R.

Genomic history of the seventh pandemic of cholera in Africa. (2017) Weill, François-Xavier; Domman, Daryl; Njamkepo, Elisabeth; Tarr, Cheryl; Rauzier, Jean; Fawal, Nizar; Keddy, Karen H.; Salje, Henrik; Moore, Sandra; Mukhopadhyay, Asish K.; Bercion, Raymond; Luquero, Francisco J.; Ngandjio, Antoinette; Dosso, Mireille; Monakhova, Elena; Garin, Benoit; Bouchier, Christiane; Pazzani, Carlo; Mutreja, Ankur; Grunow, Roland; Sidikou, Fati; Bonte, Laurence; Breurec, Sébastien; Damian, Maria; Njanpop-Lafourcade, Berthe-Marie; Sapriel, Guillaume; Page, Anne-Laure; Hamze, Monzer; Henkens, Myriam; Chowdhury, Goutam; Mengel, Martin; Koeck, Jean-Louis; Fournier, Jean-Michel; Dougan, Gordon; Grimont, Patrick A. D.; Parkhill, Julian; Holt, Kathryn E.; Piarroux, Renaud; Ramamurthy, Thandavarayan; Quilici, Marie-Laure; Thomson, Nicholas R.

Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children. (2017) The, Hao Chung; Florez de Sessions, Paola; Jie, Song; Pham Thanh, Duy; Thompson, Corinne N; Nguyen Ngoc Minh, Chau; Chu, Collins Wenhan; Tran, Tuan-Anh; Thomson, Nicholas R; Thwaites, Guy E; Rabaa, Maia A; Hibberd, Martin; Baker, Stephen

The introduction and establishment of fluoroquinolone resistant Shigella sonnei into Bhutan. (2015) Chung The, Hao; Rabaa, Maia A.; Pham Thanh, Duy; Ruekit, Sirigade; Wangchuk, Sonam; Dorji, Tshering; Pem Tshering, Kinzang; Nguyen Thi Nguyen, To; Voong Vinh, Phat; Ha Thanh, Tuyen; Nguyen Ngoc Minh, Chau; Turner, Paul; Sar, Poda; Thwaites, Guy; Holt, Kathryn E.; Thomson, Nicholas R.; Bodhidatta, Ladaporn; Mason, Carl Jeffries; Baker, Stephen

Directional gene flow and ecological separation in Yersinia enterocolitica. (2015) Reuter, Sandra; Corander, Jukka; de Been, Mark; Harris, Simon; Cheng, Lu; Hall, Miquette; Thomson, Nicholas R.; McNally, Alan

Data from: Novel R pipeline for analyzing Biolog phenotypic microarray data. (2015) Vehkala, Minna; Shubin, Mikhail; Connor, Thomas R; Thomson, Nick; Corander, Jukka folder_zip

Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling. (2014) Lindgreen, Stinus; Umu, Sinan Uğur; Lai, Alicia Sook-Wei; Eldai, Hisham; Liu, Wenting; McGimpsey, Stephanie; Wheeler, Nicole E.; Biggs, Patrick J.; Thomson, Nick R.; Barquist, Lars; Poole, Anthony M.; Gardner, Paul P.

Genomic Characterisation of Invasive Non-Typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans Isolates from Malawi. (2013) Bronowski, Christina; Fookes, Maria C.; Gilderthorp, Ruth; Ashelford, Kevin E.; Harris, Simon R.; Phiri, Amos; Hall, Neil; Gordon, Melita A.; Wain, John; Hart, Charles A.; Wigley, Paul; Thomson, Nicholas R.; Winstanley, Craig

Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis. (2011) Arnvig, Kristine B.; Comas, Iñaki; Thomson, Nicholas R.; Houghton, Joanna; Boshoff, Helena I.; Croucher, Nicholas J.; Rose, Graham; Perkins, Timothy T.; Parkhill, Julian; Dougan, Gordon; Young, Douglas B.

A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi. (2009) Perkins, Timothy T.; Kingsley, Robert A.; Fookes, Maria C.; Gardner, Paul P.; James, Keith D.; Yu, Lu; Assefa, Samuel A.; He, Miao; Croucher, Nicholas J.; Pickard, Derek J.; Maskell, Duncan J.; Parkhill, Julian; Choudhary, Jyoti; Thomson, Nicholas R.; Dougan, Gordon

DNAPlotter: circular and linear interactive genome visualization. (2009) Carver, Tim; Thomson, Nick; Bleasby, Alan; Berriman, Matthew; Parkhill, Julian

Genetic flux over time in the Salmonella lineage. (2007) Vernikos, Georgios S; Thomson, Nicholas R.; Parkhill, Julian

The genome of Rhizobium leguminosarum has recognizable core and accessory components. (2006) Young, J Peter W; Crossman, Lisa C; Johnston, Andrew WB; Thomson, Nick; Ghazoui, Zara F; Hull, Katherine H; Wexler, Margaret; Curson, Andrew RJ; Todd, Jonathan D; Poole, Philip S; Mauchline, Tim H; East, Alison K; Quail, Michael A; Churcher, Carol; Arrowsmith, Claire; Cherevach, Inna; Chillingworth, Tracey; Clarke, Kay; Cronin, Ann; Davis, Paul; Fraser, Audrey; Hance, Zahra; Hauser, Heidi; Jagels, Kay; Moule, Sharon; Mungall, Karen; Norbertczak, Halina; Rabbinowitsch, Ester; Sanders, Mandy; Simmonds, Mark; Whitehead, Sally; Parkhill, Julian