Items where Data Creator is Thomson, Nick"
Number of items: 25.
3 January 2006
  • The genome of Rhizobium leguminosarum has recognizable core and accessory components. (2006) Young, J Peter W, Crossman, Lisa C, Johnston, Andrew WB, Thomson, Nick, Ghazoui, Zara F, Hull, Katherine H, Wexler, Margaret, Curson, Andrew RJ, Todd, Jonathan D, Poole, Philip S, Mauchline, Tim H, East, Alison K, Quail, Michael A, Churcher, Carol, Arrowsmith, Claire, Cherevach, Inna, Chillingworth, Tracey, Clarke, Kay, Cronin, Ann, Davis, Paul, Fraser, Audrey, Hance, Zahra, Hauser, Heidi, Jagels, Kay, Moule, Sharon, Mungall, Karen, Norbertczak, Halina, Rabbinowitsch, Ester, Sanders, Mandy, Simmonds, Mark, Whitehead, Sally, Parkhill, Julian
  • 4 June 2007
  • Genetic flux over time in the Salmonella lineage. (2007) Vernikos, Georgios S, Thomson, Nicholas R., Parkhill, Julian
  • 2009
  • DNAPlotter: circular and linear interactive genome visualization. (2009) Carver, Tim, Thomson, Nick, Bleasby, Alan, Berriman, Matthew, Parkhill, Julian
  • 17 July 2009
  • A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi. (2009) Perkins, Timothy T., Kingsley, Robert A., Fookes, Maria C., Gardner, Paul P., James, Keith D., Yu, Lu, Assefa, Samuel A., He, Miao, Croucher, Nicholas J., Pickard, Derek J., Maskell, Duncan J., Parkhill, Julian, Choudhary, Jyoti, Thomson, Nicholas R., Dougan, Gordon
  • 3 November 2011
  • Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis. (2011) Arnvig, Kristine B., Comas, Iñaki, Thomson, Nicholas R., Houghton, Joanna, Boshoff, Helena I., Croucher, Nicholas J., Rose, Graham, Perkins, Timothy T., Parkhill, Julian, Dougan, Gordon, Young, Douglas B.
  • 14 November 2013
  • Genomic Characterisation of Invasive Non-Typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans Isolates from Malawi. (2013) Bronowski, Christina, Fookes, Maria C., Gilderthorp, Ruth, Ashelford, Kevin E., Harris, Simon R., Phiri, Amos, Hall, Neil, Gordon, Melita A., Wain, John, Hart, Charles A., Wigley, Paul, Thomson, Nicholas R., Winstanley, Craig
  • 2014
  • Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling. (2014) Lindgreen, Stinus, Umu, Sinan Uğur, Lai, Alicia Sook-Wei, Eldai, Hisham, Liu, Wenting, McGimpsey, Stephanie, Wheeler, Nicole E., Biggs, Patrick J., Thomson, Nick R., Barquist, Lars, Poole, Anthony M., Gardner, Paul P.
  • 18 March 2015
  • Data from: Novel R pipeline for analyzing Biolog phenotypic microarray data. (2015) Vehkala, Minna, Shubin, Mikhail, Connor, Thomas R, Thomson, Nick, Corander, Jukka folder_zip
  • 14 August 2015
  • Directional gene flow and ecological separation in Yersinia enterocolitica. (2015) Reuter, Sandra, Corander, Jukka, de Been, Mark, Harris, Simon, Cheng, Lu, Hall, Miquette, Thomson, Nicholas R., McNally, Alan
  • 24 November 2015
  • The introduction and establishment of fluoroquinolone resistant Shigella sonnei into Bhutan. (2015) Chung The, Hao, Rabaa, Maia A., Pham Thanh, Duy, Ruekit, Sirigade, Wangchuk, Sonam, Dorji, Tshering, Pem Tshering, Kinzang, Nguyen Thi Nguyen, To, Voong Vinh, Phat, Ha Thanh, Tuyen, Nguyen Ngoc Minh, Chau, Turner, Paul, Sar, Poda, Thwaites, Guy, Holt, Kathryn E., Thomson, Nicholas R., Bodhidatta, Ladaporn, Mason, Carl Jeffries, Baker, Stephen
  • 2 August 2017
  • Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children. (2017) The, Hao Chung, Florez de Sessions, Paola, Jie, Song, Pham Thanh, Duy, Thompson, Corinne N, Nguyen Ngoc Minh, Chau, Chu, Collins Wenhan, Tran, Tuan-Anh, Thomson, Nicholas R, Thwaites, Guy E, Rabaa, Maia A, Hibberd, Martin, Baker, Stephen
  • 26 October 2017
  • Genomic history of the seventh pandemic of cholera in Africa. (2017) Weill, François-Xavier, Domman, Daryl, Njamkepo, Elisabeth, Tarr, Cheryl, Rauzier, Jean, Fawal, Nizar, Keddy, Karen H., Salje, Henrik, Moore, Sandra, Mukhopadhyay, Asish K., Bercion, Raymond, Luquero, Francisco J., Ngandjio, Antoinette, Dosso, Mireille, Monakhova, Elena, Garin, Benoit, Bouchier, Christiane, Pazzani, Carlo, Mutreja, Ankur, Grunow, Roland, Sidikou, Fati, Bonte, Laurence, Breurec, Sébastien, Damian, Maria, Njanpop-Lafourcade, Berthe-Marie, Sapriel, Guillaume, Page, Anne-Laure, Hamze, Monzer, Henkens, Myriam, Chowdhury, Goutam, Mengel, Martin, Koeck, Jean-Louis, Fournier, Jean-Michel, Dougan, Gordon, Grimont, Patrick A. D., Parkhill, Julian, Holt, Kathryn E., Piarroux, Renaud, Ramamurthy, Thandavarayan, Quilici, Marie-Laure, Thomson, Nicholas R.
  • 26 November 2017
  • Integrated view of Vibrio cholerae in the Americas. (2017) Domman, Daryl, Quilici, Marie-Laure, Dorman, Matthew J., Njamkepo, Elisabeth, Mutreja, Ankur, Mather, Alison E., Delgado, Gabriella, Morales-Espinosa, Rosario, Grimont, Patrick A. D., Lizárraga-Partida, Marcial Leonardo, Bouchier, Christiane, Aanensen, David M., Kuri-Morales, Pablo, Tarr, Cheryl L., Dougan, Gordon, Parkhill, Julian, Campos, Josefina, Cravioto, Alejandro, Weill, François-Xavier, Thomson, Nicholas R.
  • 6 June 2018
  • Dhaka household cholera dataset. (2018) Domman, Daryl, Chowdhury, Fahima, Khan, Ashraful I., Dorman, Matthew J., Mutreja, Ankur, Uddin, Muhammad Ikhtear, Paul, Anik, Begum, Yasmin A., Charles, Richelle C., Calderwood, Stephen B., Bhuiyan, Taufiqur R., Harris, Jason B., LaRocque, Regina C., Ryan, Edward T., Qadri, Firdausi, Thomson, Nicholas R.
  • 1 February 2019
  • Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii. (2019) Boinett, Christine J., Cain, Amy K., Hawkey, Jane, Do Hoang, Nhu Tran, Khanh, Nhu Nguyen Thi, Thanh, Duy Pham, Dordel, Janina, Campbell, James I., Lan, Nguyen Phu Huong, Mayho, Matthew, Langridge, Gemma C., Hadfield, James, Chau, Nguyen Van Vinh, Thwaites, Guy E., Parkhill, Julian, Thomson, Nicholas R., Holt, Kathryn E., Baker, Stephen
  • 19 February 2019
  • Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages. (2019) Musicha, Patrick, Msefula, Chisomo L, Mather, Alison E, Chaguza, Chrispin, Cain, Amy K, Peno, Chikondi, Kallonen, Teemu, Khonga, Margaret, Denis, Brigitte, Gray, Katherine J, Heyderman, Robert S, Thomson, Nicholas R, Everett, Dean B, Feasey, Nicholas A
  • 4 April 2019
  • Additional materials from The history, genome and biology of NCTC 30: a non-pandemic Vibrio cholerae isolate from World War One. (2019) Dorman, Matthew J, Kane, Leanne, Domman, Daryl, Turnbull, Jake D, Cormie, Claire, Fazal, Mohammed-Abbas, Goulding, David A, Russell, Julie E, Alexander, Sarah, Thomson, Nicholas R.
  • 10 April 2019
  • Supporting data for 'High quality reference genomes for toxigenic and non-toxigenic Vibrio cholerae serogroup O139'. (2019) Dorman, Matthew J, Domman, Daryl, Uddin, Muhammad Ikhtear, Sharmin, Salma, Hassan Afrad, Mokibul, Begum, Yasmin Ara, Qadri, Firdausi, Thomson, Nicholas R
  • 16 January 2020
  • Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". (2020) Wyres, Kelly L., Nguyen, To N. T., Lam, Margaret M. C., Judd, Louise M., van Vinh Chau, Nguyen, Dance, David A. B., Ip, Margaret, Karkey, Abhilasha, Ling, Clare L., Miliya, Thyl, Newton, Paul N., Lan, Nguyen Phu Huong, Sengduangphachanh, Amphone, Turner, Paul, Veeraraghavan, Balaji, Vinh, Phat Voong, Vongsouvath, Manivanh, Thomson, Nicholas R., Baker, Stephen, Holt, Kathryn E.
  • 1 October 2020
  • Supporting data for "Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae". (2020) Dorman, Matthew J., Domman, Daryl, Poklepovich, Tomás, Tolley, Charlotte, Zolezzi, Gisella, Kane, Leanne, Viñas, María Rosa, Panagópulo, Marcela, Moroni, Miriam, Binsztein, Norma, Caffer, María Inés, Clare, Simon, Dougan, Gordon, Salmond, George P. C., Parkhill, Julian, Campos, Josefina, Thomson, Nicholas R.
  • 22 April 2021
  • Supporting data for "Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection". (2021) Dorman, Matthew, Thomson, Nicholas R., Campos, Josefina
  • 7 May 2021
  • Supporting data for "chiA and gbpA genes are not uniformly distributed amongst diverse Vibrio cholerae". (2021) Fennell, Thea G., Blackwell, Grace A., Thomson, Nicholas R., Dorman, Matthew J.
  • 28 May 2021
  • gbpA and chiA genes are not uniformly distributed amongst diverse Vibrio cholerae. (2021) Fennell, Thea G., Blackwell, Grace A., Thomson, Nicholas R., Dorman, Matthew J.
  • 10 June 2021
  • Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection. (2021) Dorman, Matthew, Thomson, Nicholas R., Campos, Josefina
  • 15 August 2024
  • Additional file 2 of Longitudinal analysis within one hospital in sub-Saharan Africa over 20 years reveals repeated replacements of dominant clones of Klebsiella pneumoniae and stresses the importance to include temporal patterns for vaccine design considerations. (2024) Heinz, Eva, Pearse, Oliver, Zuza, Allan, Bilima, Sithembile, Msefula, Chisomo, Musicha, Patrick, Siyabu, Patriciah, Tewesa, Edith, Graf, Fabrice E., Lester, Rebecca, Lissauer, Samantha, Cornick, Jennifer, Lewis, Joseph M., Kawaza, Kondwani, Thomson, Nicholas R., Feasey, Nicholas A.