Item Type Date Title No Grouping

Dataset

Data and R-code to accompany 'Modelling the impact of climate and the environment on the spatiotemporal dynamics of Lyme borreliosis in Germany'. (2025) Lotto Batista, Martín; Carvalho, Bruno; Gibb, Rory; Solaraju-Murali, Balakrishnan; Flasche, Stefan; Castell, Stefanie; Ghozzi, Stéphane; Lowe, Rachel

Pre-vaccination carriage prevalence of Streptococcus pneumoniae serotypes among internally displaced people in Somaliland. Data and analyses. (2024) Van zandvoort, Kevin; Hassan, Abdirahman Ibrahim; Bobe, Mohamed Omer; Pell, Casey L; Ahmed, Mohamed Saed; Ortika, Belinda D; Ibrahim, Saed; Abdi, Mohamed Ismail; Karim, Mustapha A; Eggo, Rosalind M.; Yusuf, Sulieman; Hinds, Jason; Soleman, Saeed Mohamood; Cummings, Rachael; Mcgowan, Catherine R; Mulholland, E Kim; Satzke, Catherine; Hergeeye, Mohamed Abdi; Checchi, Francesco; Flasche, Stefan

kevinvzandvoort/espicc-somaliland-digaale-survey-2019. (2022) van zandvoort, Kevin; Bobe, Mohamed Omer; Hassan, Abdirahman Ibrahim; Abdi, Mohamed Ismail; Ahmed, Mohammed Saed; Soleman, Saeed Mohamood; Warsame, Mohamed Yusuf; Wais, Muna Awil; Diggle, Emma; McGowan, Catherine R; Satzke, Catherine; Mulholland, Kim; Egeh, Mohamed Mohamoud; Hassan, Mukhtar Muhumed; Hergeeye, Mohamed Abdi; Eggo, Rosalind M; Checchi, Francesco; Flasche, Stefan

Social contacts and other risk factors for respiratory infections among internally displaced people in Somaliland. Data and analyses. (2022) Van Zandvoort, Kevin; Bobe, Mohamed Omer; Hassan, Abdirahman Ibrahim; Abdi, Mohamed Ismail; Ahmed, Mohammed Saed; Soleman, Saeed Mohamood; Warsame, Mohamed Yusuf; Wais, Muna Awil; Diggle, Emma; Satzke, Catherine; Mulholland, Kim; Egeh, Mohamed Mohamoud; Hassan, Mukhtar Muhumed; Hergeeye, Mohamed Abdi; Eggo, Rosalind M.; Checchi, Francesco; Flasche, Stefan; Mcgowan, Catherine R.

deusthindwa/social.contact.rates.estimation.hiv.malawi. (2022) Thindwa, Deus; Jambo, Kondwani C.; Ojal, John; MacPherson, Peter; Dennis Phiri, Mphatso; Pinsent, Amy; Khundi, Mcewen; Chiume, Lingstone; Gallagher, Katherine E.; Heyderman, Robert S.; Corbett, Elizabeth L.; French, Neil; Flasche, Stefan

GeorgeYQian/Nha-Trang-Contact-Study-Data-and-Code. (2022) Qian, George Y.; Clifford, Samuel; Flasche, Stefan; Papastylianou, Tasos

cmmid/coronavirus_immunity. (2021) Waterlow, Naomi R.; Van Leeuwen, Edwin; Davies, Nicholas; Flasche, Stefan; Eggo, Rosalind M.

Social contact data for IDPs in Somaliland (2019). (2021) Van Zandvoort, Kevin; Bobe, Mohamed Omer; Hassan, Abdirahman Ibrahim; Abdi, Mohamed Ismail; Ahmed, Mohamed Saed; Warsame, Mohamed Yusuf; Wais, Muna Awil; Diggle, Emma; Satzke, Catherine; Mulholland, Kim; Egeh, Mohamed Mohamoud; Hassan, Mukhtar Muhumed; Hergeeye, Mohamed Abdi; Eggo, Rosalind M.; Checchi, Francesco; Flasche, Stefan

Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021) Liu, Yang; Sandmann, Frank G.; Barnard, Rosanna C.; Pearson, Carl A.B.; CMMID Working-19 Working Group; Pastore, Roberta; Pebody, Richard; Flasche, Stefan; Jit, Mark

Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". (2021) Pavelka, Martin; van Zandvoort, Kevin; Abbott, Sam; Sherratt, Katharine; Majdan, Marek; Jarcuska, Pavel; Krajci, Marek; Flasche, Stefan; Funk, Sebastian

yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020) Liu, Yang; Gong, Wenfeng; Clifford, Samuel; Sundaram, Maria E; CMMID COVID-19 Working Group; Jit, Mark; Flasche, Stefan; Klepac, Petra

tsleng93/SocialBubble: Social Bubble (including density dependence). (2020) Leng, Trystan; Flasche, Stefan

cmmid/travel_screening_strategies. (2020) Clifford, Samuel; Quilty, Billy J.; Russell, Timothy W.; Liu, Yang; Chan, Yung-Wai Desmond; Pearson, Carl A. B.; Eggo, Rosalind M.; Endo, Akira; CMMID COVID-19 Working Group; Flasche, Stefan; Edmunds, W. John

StefanFlasche/Pneumo_Trans_Inf. (2020) Flasche, Stefan

Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. (2020) Russell, Timothy W.; Hellewell, Joel; Jarvis, Christopher I.; Van-Zandvoort, Kevin; Abbott, Sam; Ratnayake, Ruwan; Flasche, Stefan; Eggo, Rosalind M; Kucharski, Adam J.

thimotei/CFR_calculation. (2020) Russell, Timothy W.; Hellewell, Joel; Abbott, Sam; Jarvis, Christopher; Zandvoort, Kevin van; Ratnayake, Ruwan; CMMID nCov working group; Flasche, Stefan; Eggo, Rosalind M.; Edmunds, W. John; Kucharski, Adam J.

Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020) Prem, Kiesha; Liu, Yang; Russell, Timothy W; Kucharski, Adam J; Eggo, Rosalind M; Davies, Nicholas G; Jit, Mark; Klepac, Petra; Flasche, Stefan; Clifford, Samuel; Pearson, Carl A B; Munday, James D; Abbott, Sam; Gibbs, Hamish; Rosello, Alicia; Quilty, Billy J; Jombart, Thibaut; Sun, Fiona; Diamond, Charlie; Gimma, Amy; Van zandvoort, Kevin; Funk, Sebastian; Jarvis, Christopher I; Edmunds, W John; Bosse, Nikos I; Hellewell, Joel

yangclaraliu/2019nCoV_proportion_asym: WOR Submission. (2020) Liu, Yang; Funk, Sebastian; Flasche, Stefan

Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020) Hellewell, Joel; Abbott, Sam; Gimma, Amy; Bosse, Nikos; Jarvis, Christopher; Russell, Timothy; Munday, James; Kucharski, Adam; Edmunds, W John; Funk, Sebastian; Eggo, Rosalind; Sun, Fiona; Flasche, Stefan; Quilty, Billy; Davies, Nicholas; Liu, Yang; Clifford, Samuel; Klepac, Petra; Jit, Mark; Diamond, Charlie; Gibbs, Hamish; Van Zandvoort, Kevin

Effectiveness of airport-based interventions at detecting travellers and delaying an outbreak of COVID-19 (formerly 2019-nCoV). (2020) Clifford, Samuel; Quilty, Billy; CMMID nCoV working group; Pearson, Carl; Flasche, Stefan; Eggo, Rosalind M.

denvax: Simple Dengue Test and Vaccinate Cost Thresholds. (2019) Pearson, Carl; Abbas, Kaja M.; Clifford, Samuel; Flasche, Stefan; Hladish, Thomas J.

Social contact data for China mainland. (2019) Zhang, Juanjuan; Klepac, Petra; Read, Jonathan; Rosello, Alicia; Wang, Xiling; Lai, Shengjie; Li, Meng; Song, Yujian; Wei, Qingzhen; Jiang, Hao; Yang, Juan; Lynn, Henry; Flasche, Stefan; Jit, Mark; Yu, Hongjie

Denvaxia-in-Phillippines. (2019) Flasche, Stefan

Additional file 2: of Estimating the burden of dengue and the impact of release of wMel Wolbachia-infected mosquitoes in Indonesia: a modelling study. (2019) O'reilly, Kathleen; Hendrickx, Emilie; Kharisma, Dinar D.; Wilastonegoro, Nandyan N.; Carrington, Lauren B.; Elyazar, Iqbal R. F.; Kucharsk, Adam J.; Lowe, Rachel; Flasche, Stefan; Pigott, David M.; Reiner Jr, Robert C.; Edmunds, John; Hay, Simon I.; Yakob, Laith; Shepard, Donald S.; Brady, Oliver

Data for: Identifying human encounters that shape the transmission of Streptococcus pneumoniae and other acute respiratory infections. (2018) le Polain de Waroux, Olivier; Flasche, Stefan; Kucharski, Adam J; Langendorf, Celine; Ndazima, Donny; Mwanga-Amumpaire, Juliet; Grais, Rebecca F; Cohuet, Sandra; Edmunds, W John

Social mixing in Fiji: Who-eats-with-whom contact patterns and the implications of age and ethnic heterogeneity for disease dynamics in the Pacific Islands. (2017) Watson, Conall H.; Coriakula, Jeremaia; Ngoc, Dung Tran Thi; Flasche, Stefan; Kucharski, Adam J.; Lau, Colleen L.; Thieu, Nga Tran Vu; le Polain de Waroux, Olivier; Rawalai, Kitione; Van, Tan Trinh; Taufa, Mere; Baker, Stephen; Nilles, Eric J.; Kama, Mike; Edmunds, W. John

Supplementary material from "Exploring the role of competition induced by non-vaccine serotypes for herd protection following pneumococcal vaccination". (2017) Masala, Giovanni; Lipsitch, M.; Bottomley, Christian; Flasche, Stefan

Ebola virus disease in the Democratic Republic of the Congo, 1976-2014: Figures and Data. (2015) Rosello, Alicia; Mossoko, Mathias; Flasche, Stefan; Vanhoek, Albert; Mbala, Placide; Camacho, Anton; Funk, Sebastian; Kucharski, Adam; Ilunga, Benoit Kebela; Edmunds, John; Piot, Peter; Baguelin, Marc; Tamfum, Jean-Jacques Muyembe description

Bed capacity for Ebola patients in Sierra Leone. (2015) Camacho, Anton; Kucharski, Adam J.; Aki-Sawyerr, Y; White, M A; Flasche, Stefan; Baguelin, Marc; Pollington, T M; Carney, J; Glover, Rebecca; Smout, E; Tiffany, A; Edmunds, W. John; Funk, Sebastian

Age-Dependent Prevalence of Nasopharyngeal Carriage of Streptococcus pneumoniae before Conjugate Vaccine Introduction: Supporting Information. (2014) Le Polain, Olivier; Flasche, Stefan; Prieto, David; Edmunds, John description