23 January 2014

Le Polain, O, Flasche, S, Prieto, D and Edmunds, J (2014). Age-Dependent Prevalence of Nasopharyngeal Carriage of Streptococcus pneumoniae before Conjugate Vaccine Introduction: Supporting Information. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.72.

10 February 2015

Camacho, A, Kucharski, AJ, Aki-Sawyerr, Y, White, MA, Flasche, S, Baguelin, M, Pollington, TM, Carney, J, Glover, R, Smout, E, Tiffany, A, Edmunds, WJ and Funk, S (2015). Bed capacity for Ebola patients in Sierra Leone. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.1304889.v1

3 November 2015

Rosello, A, Mossoko, M, Flasche, S, Vanhoek, A, Mbala, P, Camacho, A, Funk, S, Kucharski, A, Ilunga, BK, Edmunds, J, Piot, P, Baguelin, M and Tamfum, JM (2015). Ebola virus disease in the Democratic Republic of the Congo, 1976-2014: Figures and Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.30.

24 October 2017

Masala, G, Lipsitch, M, Bottomley, C and Flasche, S (2017). Supplementary material from "Exploring the role of competition induced by non-vaccine serotypes for herd protection following pneumococcal vaccination". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3911881.v1

12 December 2017

Watson, CH, Coriakula, J, Ngoc, DTT, Flasche, S, Kucharski, AJ, Lau, CL, Thieu, NTV, le Polain de Waroux, O, Rawalai, K, Van, TT, Taufa, M, Baker, S, Nilles, EJ, Kama, M and Edmunds, WJ (2017). Social mixing in Fiji: Who-eats-with-whom contact patterns and the implications of age and ethnic heterogeneity for disease dynamics in the Pacific Islands. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0186911

26 July 2018

le Polain de Waroux, O, Flasche, S, Kucharski, AJ, Langendorf, C, Ndazima, D, Mwanga-Amumpaire, J, Grais, RF, Cohuet, S and Edmunds, WJ (2018). Data for: Identifying human encounters that shape the transmission of Streptococcus pneumoniae and other acute respiratory infections. [Data Collection]. Mendeley Data. https://doi.org/10.17632/rdskdgxrh3.1

10 September 2019

O'reilly, K, Hendrickx, E, Kharisma, DD, Wilastonegoro, NN, Carrington, LB, Elyazar, IRF, Kucharsk, AJ, Lowe, R, Flasche, S, Pigott, DM, Reiner Jr, RC, Edmunds, J, Hay, SI, Yakob, L, Shepard, DS and Brady, O (2019). Data and code from: Estimating the burden of dengue and the impact of release of wMel Wolbachia infected mosquitoes in Indonesia: a modelling study. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8243168.v1

17 October 2019

Flasche, S (2019). Denvaxia-in-Phillippines. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3496819

22 October 2019

Zhang, J, Klepac, P, Read, J, Rosello, A, Wang, X, Lai, S, Li, M, Song, Y, Wei, Q, Jiang, H, Yang, J, Lynn, H, Flasche, S, Jit, M and Yu, H (2019). Social contact data for China mainland. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3516113

12 December 2019

Pearson, C, Abbas, KM, Clifford, S, Flasche, S and Hladish, TJ (2019). denvax: Simple Dengue Test and Vaccinate Cost Thresholds. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/web/packages/denvax/index.html

27 January 2020

Clifford, S, Quilty, B, CMMID nCoV working group, Pearson, C, Flasche, S and Eggo, RM (2020). Effectiveness of airport-based interventions at detecting travellers and delaying an outbreak of COVID-19 (formerly 2019-nCoV). [Data Collection]. Github. https://github.com/cmmid/screening_outbreak_delay

28 February 2020

Hellewell, J, Abbott, S, Gimma, A, Bosse, N, Jarvis, C, Russell, T, Munday, J, Kucharski, A, Edmunds, WJ, Funk, S, Eggo, R, Sun, F, Flasche, S, Quilty, B, Davies, N, Liu, Y, Clifford, S, Klepac, P, Jit, M, Diamond, C, Gibbs, H and Van Zandvoort, K (2020). Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. [Data Collection]. Github. https://github.com/cmmid/ringbp/

13 March 2020

Liu, Y, Funk, S and Flasche, S (2020). yangclaraliu/2019nCoV_proportion_asym: WOR Submission. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3709941

18 March 2020

Prem, K, Liu, Y, Russell, TW, Kucharski, AJ, Eggo, RM, Davies, NG, Jit, M, Klepac, P, Flasche, S, Clifford, S, Pearson, CAB, Munday, JD, Abbott, S, Gibbs, H, Rosello, A, Quilty, BJ, Jombart, T, Sun, F, Diamond, C, Gimma, A, Van zandvoort, K, Funk, S, Jarvis, CI, Edmunds, WJ, Bosse, NI and Hellewell, J (2020). Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. [Data Collection]. Github. https://github.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing

22 March 2020

Russell, TW, Hellewell, J, Abbott, S, Jarvis, C, Zandvoort, Kv, Ratnayake, R, CMMID nCov working group, Flasche, S, Eggo, RM, Edmunds, WJ and Kucharski, AJ (2020). thimotei/CFR_calculation. [Data Collection]. Github. https://github.com/thimotei/CFR_calculation

26 March 2020

Russell, TW, Hellewell, J, Jarvis, CI, Van-Zandvoort, K, Abbott, S, Ratnayake, R, Flasche, S, Eggo, RM and Kucharski, AJ (2020). Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. [Data Collection]. Github. https://github.com/thimotei/cCFRDiamondPrincess

20 April 2020

Flasche, S (2020). StefanFlasche/Pneumo_Trans_Inf. [Data Collection]. Github. https://github.com/StefanFlasche/Pneumo_Trans_Inf

24 July 2020

Clifford, S, Quilty, BJ, Russell, TW, Liu, Y, Chan, YD, Pearson, CAB, Eggo, RM, Endo, A, CMMID COVID-19 Working Group, Flasche, S and Edmunds, WJ (2020). cmmid/travel_screening_strategies. [Data Collection]. Github. https://github.com/cmmid/travel_screening_strategies

3 September 2020

Leng, T and Flasche, S (2020). tsleng93/SocialBubble: Social Bubble (including density dependence). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3982789

7 September 2020

Liu, Y, Gong, W, Clifford, S, Sundaram, ME, CMMID COVID-19 Working Group, Jit, M, Flasche, S and Klepac, P (2020). yangclaraliu/covid_surveillance_strategy: WOR Submission. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4017353

1 March 2021

Pavelka, M, van Zandvoort, K, Abbott, S, Sherratt, K, Majdan, M, Jarcuska, P, Krajci, M, Flasche, S and Funk, S (2021). Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4570938

21 June 2021

Liu, Y, Sandmann, FG, Barnard, RC, Pearson, CA, CMMID Working-19 Working Group, Pastore, R, Pebody, R, Flasche, S and Jit, M (2021). Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4964148

20 August 2021

Van Zandvoort, K, Bobe, MO, Hassan, AI, Abdi, MI, Ahmed, MS, Warsame, MY, Wais, MA, Diggle, E, Satzke, C, Mulholland, K, Egeh, MM, Hassan, MM, Hergeeye, MA, Eggo, RM, Checchi, F and Flasche, S (2021). Social contact data for IDPs in Somaliland (2019). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5226280

6 September 2021

Waterlow, NR, Van Leeuwen, E, Davies, N, Flasche, S and Eggo, RM (2021). cmmid/coronavirus_immunity. [Data Collection]. Github. https://github.com/cmmid/coronavirus_immunity

11 March 2022

Qian, GY, Clifford, S, Flasche, S and Papastylianou, T (2022). GeorgeYQian/Nha-Trang-Contact-Study-Data-and-Code. [Data Collection]. Github. https://github.com/GeorgeYQian/Nha-Trang-Contact-Study-Data-and-Code

22 June 2022

Thindwa, D, Jambo, KC, Ojal, J, MacPherson, P, Dennis Phiri, M, Pinsent, A, Khundi, M, Chiume, L, Gallagher, KE, Heyderman, RS, Corbett, EL, French, N and Flasche, S (2022). deusthindwa/social.contact.rates.estimation.hiv.malawi. [Data Collection]. Github. https://github.com/deusthindwa/social.contact.rates.estimation.hiv.malawi

12 September 2022

Van Zandvoort, K, Bobe, MO, Hassan, AI, Abdi, MI, Ahmed, MS, Soleman, SM, Warsame, MY, Wais, MA, Diggle, E, Satzke, C, Mulholland, K, Egeh, MM, Hassan, MM, Hergeeye, MA, Eggo, RM, Checchi, F, Flasche, S and Mcgowan, CR (2022). Social contacts and other risk factors for respiratory infections among internally displaced people in Somaliland. Data and analyses. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5225140

16 September 2022

van zandvoort, K, Bobe, MO, Hassan, AI, Abdi, MI, Ahmed, MS, Soleman, SM, Warsame, MY, Wais, MA, Diggle, E, McGowan, CR, Satzke, C, Mulholland, K, Egeh, MM, Hassan, MM, Hergeeye, MA, Eggo, RM, Checchi, F and Flasche, S (2022). kevinvzandvoort/espicc-somaliland-digaale-survey-2019. [Data Collection]. GitHub. https://github.com/kevinvzandvoort/espicc_somaliland_digaale_contact_survey_2019

5 June 2024

Van zandvoort, K, Hassan, AI, Bobe, MO, Pell, CL, Ahmed, MS, Ortika, BD, Ibrahim, S, Abdi, MI, Karim, MA, Eggo, RM, Yusuf, S, Hinds, J, Soleman, SM, Cummings, R, Mcgowan, CR, Mulholland, EK, Satzke, C, Hergeeye, MA, Checchi, F and Flasche, S (2024). Pre-vaccination carriage prevalence of Streptococcus pneumoniae serotypes among internally displaced people in Somaliland. Data and analyses. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.11493115