Item Type Date No Grouping

Data Collection

Dengue virus type 4 isolate DET-P-0428-1 polyprotein (POLY) gene, complete cds; and sfRNA2 lncRNA gene, partial sequence. (2023) Ashall, James, Shah, Sonal, Biggs, Joseph R, Chang, Jui-Ning R, Jafari, Yalda, Brady, Oliver J., Mai, Huynh Kim, Lien, Le Thuy, Do Thai, Hung, Nguyen, Hien Anh Thi, Anh, Dang Duc, Iwasaki, Chihiro, Kitamura, Noriko, Van Loock, Marnix, Herrera-Taracena, Guillermo, Rasschaert, Freya, Van Wesenbeeck, Liesbeth, Yoshida, Lay-Myint, Hafalla, Julius Clemence R, Hue, Stephane, Hibberd, Martin L.

Dengue virus type I isolate DEN-P-1098-1 polyprotein (POLY) gene, partial cds. (2023) Ashall, James, Shah, Sonal, Biggs, Joseph R, Chang, Jui-Ning R, Jafari, Yalda, Brady, Oliver J., Mai, Huynh Kim, Lien, Le Thuy, Do Thai, Hung, Nguyen, Hien Anh Thi, Anh, Dang Duc, Iwasaki, Chihiro, Kitamura, Noriko, Van Loock, Marnix, Herrera-Taracena, Guillermo, Rasschaert, Freya, Van Wesenbeeck, Liesbeth, Yoshida, Lay-Myint, Hafalla, Julius Clemence R, Hue, Stephane, Hibberd, Martin L.

Demographic characteristics of the reporting study population at enrolment. (2022) Biggs, Joseph, Sy, Ava Kristy, Ashall, James, Santoso, Marsha S, Brady, Oliver J, Reyes, Mary Anne Joy, Quinones, Mary Ann, Jones-Warner, William, Tandoc, Amadou O, Sucaldito, Nemia L, Huynh, Kim Mai, Le, Thuy Lien, Hung, Do Thai, Nguyen, Hien Anh Thi, Dang, Duc Anh, Iwasaki, Chihiro, Kitamura, Noriko, Van Loock, Marnix, Herrera-Taracena, Guillermo, Menten, Joris, Rasschaert, Freya, Van Wesenbeeck, Liesbeth, Masyeni, Sri, Haryanto, Sotianingsih, Yohan, Benediktus, Cutiongco-de la Paz, Eva, Yoshida, Lay-Myint, Hue, Stephane, Capeding, Maria Rosario Z, Padilla, Carmencita D, Sasmono, R Tedjo, Hafalla, Julius Clemence R, Hibberd, Martin L

Sensitivity (95%CI) of NS1 RDTs in capturing DENV1-4 infections stratified by immune status among patients from Vietnam (N:1,217). (2022) Biggs, Joseph, Sy, Ava Kristy, Ashall, James, Santoso, Marsha S, Brady, Oliver J, Reyes, Mary Anne Joy, Quinones, Mary Ann, Jones-Warner, William, Tandoc, Amadou O, Sucaldito, Nemia L, Huynh, Kim Mai, Le, Thuy Lien, Hung, Do Thai, Nguyen, Hien Anh Thi, Dang, Duc Anh, Iwasaki, Chihiro, Kitamura, Noriko, Van Loock, Marnix, Herrera-Taracena, Guillermo, Menten, Joris, Rasschaert, Freya, Van Wesenbeeck, Liesbeth, Masyeni, Sri, Haryanto, Sotianingsih, Yohan, Benediktus, Cutiongco-de la Paz, Eva, Yoshida, Lay-Myint, Hue, Stephane, Capeding, Maria Rosario Z, Padilla, Carmencita D, Sasmono, R Tedjo, Hafalla, Julius Clemence R, Hibberd, Martin L

A summary of data collected from suspected dengue patients included in the study population from Indonesia, Vietnam and the Philippines. (2022) Biggs, Joseph R, Sy, Ava Kristy, Ashall, James, Santoso, Marsha S, Brady, Oliver J, Reyes, Mary Anne Joy, Quinones, Mary Ann, Jones-Warner, William, Tandoc, Amadou O, Sucaldito, Nemia L, Huynh, Kim Mai, Le, Thuy Lien, Hung, Do Thai, Nguyen, Hien Anh Thi, Dang, Duc Anh, Iwasaki, Chihiro, Kitamura, Noriko, Van Loock, Marnix, Herrera-Taracena, Guillermo, Menten, Joris, Rasschaert, Freya, Van Wesenbeeck, Liesbeth, Masyeni, Sri, Haryanto, Sotianingsih, Yohan, Benediktus, Cutiongco-de la Paz, Eva, Yoshida, Lay-Myint, Hue, Stephane, Capeding, Maria Rosario Z, Padilla, Carmencita D, Sasmono, R Tedjo, Hafalla, Julius Clemence R, Hibberd, Martin L

Data for: "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants". (2021) Lay, Christophe, Chu, Collins Wenhan, Purbojati, Rikky Wenang, Acerbi, Enzo, Drautz-Moses, Daniela I., de Sessions, Paola Florez, Jie, Song, Ho, Eliza, Kok, Yee Jiun, Bi, Xuezhi, Chen, Shuwen, Mak, Shi Ya, Chua, Mei Chien, Goh, Anne E. N., Chiang, Wen Chin, Rao, Rajeshwar, Chaithongwongwatthana, Surasith, Khemapech, Nipon, Chongsrisawat, Voranush, Martin, Rocio, Koh, Yanqing, Lohar, Sachin R., Tan, Ivan Chin Hin, Anng, Wong Anng, Jie, Chen, Bartke, Nana, Ben-Amor, Kaouther, Renes, Ingrid B., Wong, Fiona, Roeselers, Guus, Ho, Ying Swan, Hibberd, Martin L., Schuster, Stephan C., Knol, Jan

Identification of Reduced Host Transcriptomic Signatures for Tuberculosis Disease and Digital PCR-Based Validation and Quantification. (2021) Gliddon, Harriet D., Kaforou, Myrsini, Alikian, Mary, Habgood-Coote, Dominic, Zhou, Chenxi, Oni, Tolu, Anderson, Suzanne T., Brent, Andrew J., Crampin, Amelia C., Eley, Brian, Heyderman, Robert, Kern, Florian, Langford, Paul R., Ottenhoff, Tom H. M., Hibberd, Martin L., French, Neil, Wright, Victoria J., Dockrell, Hazel M., Coin, Lachlan J., Wilkinson, Robert J., Levin, Michael

Risk factor profiles and clinical outcomes for children and adults with pneumococcal infections in Singapore: A need to expand vaccination policy? (2019) Martinez-Vega, Rosario, Jauneikaite, Elita, Thoon, Koh Cheng, Chua, Hui Ying, Huishi Chua, Amanda, Khong, Wei Xin, Tan, Ban Hock, Low Guek Hong, Jenny, Venkatachalam, Indumathi, Anantharajah Tambyah, Paul, Hibberd, Martin L., Clarke, Stuart C., Ng, Oon Tek

Risk factor profiles and clinical outcomes for children and adults with pneumococcal infections in Singapore: A need to expand vaccination policy? S1 Dataset. (2019) Martinez-Vega, Rosario, Jauneikaite, Elita, Koh, Cheng Thoon, Hui, Ying Chua, Huishi Chua, Amanda, Khong, Wei Xin, Ban Hock, Tan, Guek Hong, Jenny Low, Venkatachalam, Indumathi, Anantharajah Tambyah, Paul, Hibberd, Martin L., Clarke, Stuart C., Oon Tek, Ng

Additional file 1: of Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. (2019) Phelan, Jody, O’Sullivan, Denise M, Machado, Diana, Ramos, Jorge, Oppong, Yaa EA, Campino, Susana, O’Grady, Justin, McNerney, Ruth, Hibberd, Martin L, Viveiros, Miguel, Huggett, Jim F, Clark, Taane G.

Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization. (2019) O’Connor, Daniel, Png, Eileen, Khor, Chiea Chuen, Snape, Matthew D, Hill, Adrian VS, van der Klis, Fiona, Hoggart, Clive, Levin, Michael, Hibberd, Martin L., Pollard, Andrew J

Genome organization of dengue and Zika viruses. (2019) Sim, Adelene Y. L., Huber, Roland G., Lim, Xin Ni, Ng, Wy Ching, Chawla, Tanu, Aw, JG, Lim, Su Ying, Shen, Y, Boon, K, Choy, Milly M., Wilm, Andreas, de Sessions, Paola Florez, Hibberd, Martin, Nagarajan, Niranjan, Ooi, Eng Eong, Bond, Peter J., Sessions, October M., Wan, Yue

Identification of regulatory variants associated with genetic susceptibility to meningococcal disease. (2019) Borghini, Lisa, Png, Eileen, Binder, Alexander, Wright, Victoria J, Pinnock, Ellie, de Groot, Ronald, Hazelzet, Jan, Emonts, Marieke, Van der Flier, Michiel, Schlapbach, Luregn J, Anderson, Suzanne, Secka, Fatou, Salas, Antonio, Fink, Colin, Carrol, Enitan D, Pollard, Andrew J, Coin, Lachlan J, Kuijpers, Taco W, Martinon-Torres, Federico, Zenz, Werner, Levin, Michael, Hibberd, Martin, Davila, Sonia

adamkucharski/fiji-denv3-2014. (2018) Kucharski, Adam J, Kama, Mike, Watson, Conall H, Aubry, Maite, Funk, Sebastian, Henderson, Alasdair D, Brady, Oliver J, Vanhomwegen, Jessica, Manuguerra, Jean-Claude, Lau, Colleen L, Edmunds, W John, Aaskov, John, Nilles, Eric James, Cao-Lormeau, Van-Mai, Hue, Stephane, Hibberd, Martin L

Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. (2018) Palittapongarnpim, Prasit, Ajawatanawong, Pravech, Viratyosin, Wasna, Smittipat, Nat, Disratthakit, Areeya, Mahasirimongkol, Surakameth, Yanai, Hideki, Yamada, Norio, Nedsuwan, Supalert, Imasanguan, Worarat, Kantipong, Pacharee, Chaiyasirinroje, Boonchai, Wongyai, Jiraporn, Toyo-oka, Licht, Phelan, Jody, Parkhill, Julian, Clark, Taane G., Hibberd, Martin L., Ruengchai, Wuthiwat, Palittapongarnpim, Panawun, Juthayothin, Tada, Tongsima, Sissades, Tokunaga, Katsushi

Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. (2017) Diez Benavente, Ernest, Florez de Sessions, Paola, Moon, Robert W., Holder, Anthony A., Blackman, Michael J., Roper, Cally, Drakeley, Christopher J., Pain, Arnab, Sutherland, Colin J., Hibberd, Martin L., Campino, Susana, Clark, Taane G.

Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children. (2017) The, Hao Chung, Florez de Sessions, Paola, Jie, Song, Pham Thanh, Duy, Thompson, Corinne N, Nguyen Ngoc Minh, Chau, Chu, Collins Wenhan, Tran, Tuan-Anh, Thomson, Nicholas R, Thwaites, Guy E, Rabaa, Maia A, Hibberd, Martin, Baker, Stephen

Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. (2017) Andreu, Nuria, Phelan, Jody, de Sessions, Paola F, Cliff, Jackie M., Clark, Taane, Hibberd, Martin

PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. (2016) Chen, Feng, Wang, Shuang, Jiang, Xiaoqian, Ding, Sijie, Lu, Yao, Kim, Jihoon, Sahinalp, S. Cenk, Shimizu, Chisato, Burns, Jane C., Wright, Victoria J., Png, Eileen, Hibberd, Martin L., Lloyd, David D., Yang, Hai, Telenti, Amalio, Bloss, Cinnamon S., Fox, Dov, Lauter, Kristin, Ohno-Machado, Lucila

Natural resistance to Meningococcal Disease related to CFH loci: Meta-analysis of genome-wide association studies. (2016) Martinón-Torres, Federico, Png, Eileen, Khor, Chiea Chuen, Davila, Sonia, Wright, Victoria J., Sim, Kar Seng, Vega, Ana, Fachal, Laura, Inwald, David, Nadel, Simon, Carrol, Enitan D., Martinón-Torres, Nazareth, Alonso, Sonia Marcos, Carracedo, Angel, Morteruel, Elvira, López-Bayón, Julio, Torre, Andrés Concha, Monge, Cristina Calvo, de Aguilar, Pilar Azcón González, Torné, Elisabeth Esteban, Martínez-Padilla, María del Carmen, Martinón-Sánchez, José María, Levin, Michael, Hibberd, Martin L., Salas, Antonio

Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. (2015) Phelan, Jody, Coll, Francesc, Mcnerney, Ruth, Ascher, David B., Pires, Douglas E. V., Furnham, Nick, Coeck, Nele, Hill-Cawthorne, Grant A., Nair, Mridul B., Mallard, Kim, Ramsay, Andrew, Campino, Susana, Hibberd, Martin, Pain, Arnab, Rigouts, Leen, Clark, Taane description

Genome-wide transcriptional profiling of HIV positive and negative adults with active tuberculosis, latent TB infection and other diseases. (2013) Anderson, Suzanne T, Coin, Lachlan J, Crampin, Amelia C., Dockrell, Hazel M., Eley, Brian, French, Neil, Heyderman, Robert S., Hibberd, Martin L., Kaforou, Myrsini, Kern, Florian, Langford, Paul R., Levin, M, Ling, Ling, Wilkinson, Robert J., Wright, Victoria J.