Data Collection

Ashall, J, Shah, S, Biggs, JR, Chang, JR, Jafari, Y, Brady, OJ, Mai, HK, Lien, LT, Do Thai, H, Nguyen, HAT, Anh, DD, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Rasschaert, F, Van Wesenbeeck, L, Yoshida, L, Hafalla, JCR, Hue, S and Hibberd, ML (2023). Dengue virus type 4 isolate DET-P-0428-1 polyprotein (POLY) gene, complete cds; and sfRNA2 lncRNA gene, partial sequence. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/nuccore/OQ427062

Ashall, J, Shah, S, Biggs, JR, Chang, JR, Jafari, Y, Brady, OJ, Mai, HK, Lien, LT, Do Thai, H, Nguyen, HAT, Anh, DD, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Rasschaert, F, Van Wesenbeeck, L, Yoshida, L, Hafalla, JCR, Hue, S and Hibberd, ML (2023). Dengue virus type I isolate DEN-P-1098-1 polyprotein (POLY) gene, partial cds. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/nuccore/OQ426566.1/

Biggs, J, Sy, AK, Ashall, J, Santoso, MS, Brady, OJ, Reyes, MAJ, Quinones, MA, Jones-Warner, W, Tandoc, AO, Sucaldito, NL, Huynh, KM, Le, TL, Hung, DT, Nguyen, HAT, Dang, DA, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Menten, J, Rasschaert, F, Van Wesenbeeck, L, Masyeni, S, Haryanto, S, Yohan, B, Cutiongco-de la Paz, E, Yoshida, L, Hue, S, Capeding, MRZ, Padilla, CD, Sasmono, RT, Hafalla, JCR and Hibberd, ML (2022). Demographic characteristics of the reporting study population at enrolment. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010365.s002

Biggs, J, Sy, AK, Ashall, J, Santoso, MS, Brady, OJ, Reyes, MAJ, Quinones, MA, Jones-Warner, W, Tandoc, AO, Sucaldito, NL, Huynh, KM, Le, TL, Hung, DT, Nguyen, HAT, Dang, DA, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Menten, J, Rasschaert, F, Van Wesenbeeck, L, Masyeni, S, Haryanto, S, Yohan, B, Cutiongco-de la Paz, E, Yoshida, L, Hue, S, Capeding, MRZ, Padilla, CD, Sasmono, RT, Hafalla, JCR and Hibberd, ML (2022). Sensitivity (95%CI) of NS1 RDTs in capturing DENV1-4 infections stratified by immune status among patients from Vietnam (N:1,217). [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010365.s003

Biggs, JR, Sy, AK, Ashall, J, Santoso, MS, Brady, OJ, Reyes, MAJ, Quinones, MA, Jones-Warner, W, Tandoc, AO, Sucaldito, NL, Huynh, KM, Le, TL, Hung, DT, Nguyen, HAT, Dang, DA, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Menten, J, Rasschaert, F, Van Wesenbeeck, L, Masyeni, S, Haryanto, S, Yohan, B, Cutiongco-de la Paz, E, Yoshida, L, Hue, S, Capeding, MRZ, Padilla, CD, Sasmono, RT, Hafalla, JCR and Hibberd, ML (2022). A summary of data collected from suspected dengue patients included in the study population from Indonesia, Vietnam and the Philippines. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010365.s001

Lay, C, Chu, CW, Purbojati, RW, Acerbi, E, Drautz-Moses, DI, de Sessions, PF, Jie, S, Ho, E, Kok, YJ, Bi, X, Chen, S, Mak, SY, Chua, MC, Goh, AEN, Chiang, WC, Rao, R, Chaithongwongwatthana, S, Khemapech, N, Chongsrisawat, V, Martin, R, Koh, Y, Lohar, SR, Tan, ICH, Anng, WA, Jie, C, Bartke, N, Ben-Amor, K, Renes, IB, Wong, F, Roeselers, G, Ho, YS, Hibberd, ML, Schuster, SC and Knol, J (2021). Data for: "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Gliddon, HD, Kaforou, M, Alikian, M, Habgood-Coote, D, Zhou, C, Oni, T, Anderson, ST, Brent, AJ, Crampin, AC, Eley, B, Heyderman, R, Kern, F, Langford, PR, Ottenhoff, THM, Hibberd, ML, French, N, Wright, VJ, Dockrell, HM, Coin, LJ, Wilkinson, RJ and Levin, M (2021). Identification of Reduced Host Transcriptomic Signatures for Tuberculosis Disease and Digital PCR-Based Validation and Quantification. [Data Collection]. Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.637164.s001

Martinez-Vega, R, Jauneikaite, E, Thoon, KC, Chua, HY, Huishi Chua, A, Khong, WX, Tan, BH, Low Guek Hong, J, Venkatachalam, I, Anantharajah Tambyah, P, Hibberd, ML, Clarke, SC and Ng, OT (2019). Risk factor profiles and clinical outcomes for children and adults with pneumococcal infections in Singapore: A need to expand vaccination policy? [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0220951

Martinez-Vega, R, Jauneikaite, E, Koh, CT, Hui, YC, Huishi Chua, A, Khong, WX, Ban Hock, T, Guek Hong, JL, Venkatachalam, I, Anantharajah Tambyah, P, Hibberd, ML, Clarke, SC and Oon Tek, N (2019). Risk factor profiles and clinical outcomes for children and adults with pneumococcal infections in Singapore: A need to expand vaccination policy? S1 Dataset. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0220951.s009

Phelan, J, O’Sullivan, DM, Machado, D, Ramos, J, Oppong, YE, Campino, S, O’Grady, J, McNerney, R, Hibberd, ML, Viveiros, M, Huggett, JF and Clark, TG (2019). Additional file 1: of Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8318861.v1

O’Connor, D, Png, E, Khor, CC, Snape, MD, Hill, AV, van der Klis, F, Hoggart, C, Levin, M, Hibberd, ML and Pollard, AJ (2019). Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization. [Data Collection]. Cell Reports. https://doi.org/10.1016/j.celrep.2019.05.053

Sim, AYL, Huber, RG, Lim, XN, Ng, WC, Chawla, T, Aw, J, Lim, SY, Shen, Y, Boon, K, Choy, MM, Wilm, A, de Sessions, PF, Hibberd, M, Nagarajan, N, Ooi, EE, Bond, PJ, Sessions, OM and Wan, Y (2019). Genome organization of dengue and Zika viruses. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE106483

Borghini, L, Png, E, Binder, A, Wright, VJ, Pinnock, E, de Groot, R, Hazelzet, J, Emonts, M, Van der Flier, M, Schlapbach, LJ, Anderson, S, Secka, F, Salas, A, Fink, C, Carrol, ED, Pollard, AJ, Coin, LJ, Kuijpers, TW, Martinon-Torres, F, Zenz, W, Levin, M, Hibberd, M and Davila, S (2019). Identification of regulatory variants associated with genetic susceptibility to meningococcal disease. [Data Collection]. Scientific Reports. https://doi.org/10.1038/s41598-019-43292-6

Kucharski, AJ, Kama, M, Watson, CH, Aubry, M, Funk, S, Henderson, AD, Brady, OJ, Vanhomwegen, J, Manuguerra, J, Lau, CL, Edmunds, WJ, Aaskov, J, Nilles, EJ, Cao-Lormeau, V, Hue, S and Hibberd, ML (2018). adamkucharski/fiji-denv3-2014. [Data Collection]. Github. https://github.com/adamkucharski/fiji-denv3-2014

Palittapongarnpim, P, Ajawatanawong, P, Viratyosin, W, Smittipat, N, Disratthakit, A, Mahasirimongkol, S, Yanai, H, Yamada, N, Nedsuwan, S, Imasanguan, W, Kantipong, P, Chaiyasirinroje, B, Wongyai, J, Toyo-oka, L, Phelan, J, Parkhill, J, Clark, TG, Hibberd, ML, Ruengchai, W, Palittapongarnpim, P, Juthayothin, T, Tongsima, S and Tokunaga, K (2018). Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. [Data Collection]. Scientific Reports. https://doi.org/10.1038/s41598-018-29986-3

Diez Benavente, E, Florez de Sessions, P, Moon, RW, Holder, AA, Blackman, MJ, Roper, C, Drakeley, CJ, Pain, A, Sutherland, CJ, Hibberd, ML, Campino, S and Clark, TG (2017). Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pgen.1007008

The, HC, Florez de Sessions, P, Jie, S, Pham Thanh, D, Thompson, CN, Nguyen Ngoc Minh, C, Chu, CW, Tran, T, Thomson, NR, Thwaites, GE, Rabaa, MA, Hibberd, M and Baker, S (2017). Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children. [Data Collection]. Gut microbes. https://doi.org/10.1080/19490976.2017.1361093

Andreu, N, Phelan, J, de Sessions, PF, Cliff, JM, Clark, T and Hibberd, M (2017). Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. [Data Collection]. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88801

Chen, F, Wang, S, Jiang, X, Ding, S, Lu, Y, Kim, J, Sahinalp, SC, Shimizu, C, Burns, JC, Wright, VJ, Png, E, Hibberd, ML, Lloyd, DD, Yang, H, Telenti, A, Bloss, CS, Fox, D, Lauter, K and Ohno-Machado, L (2016). PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. [Data Collection]. Bioinformatics. https://doi.org/10.1093/bioinformatics/btw758

Martinón-Torres, F, Png, E, Khor, CC, Davila, S, Wright, VJ, Sim, KS, Vega, A, Fachal, L, Inwald, D, Nadel, S, Carrol, ED, Martinón-Torres, N, Alonso, SM, Carracedo, A, Morteruel, E, López-Bayón, J, Torre, AC, Monge, CC, de Aguilar, PAG, Torné, EE, Martínez-Padilla, MdC, Martinón-Sánchez, JM, Levin, M, Hibberd, ML and Salas, A (2016). Natural resistance to Meningococcal Disease related to CFH loci: Meta-analysis of genome-wide association studies. [Data Collection]. Scientific Reports. https://doi.org/10.1038/srep35842

Phelan, J, Coll, F, Mcnerney, R, Ascher, DB, Pires, DEV, Furnham, N, Coeck, N, Hill-Cawthorne, GA, Nair, MB, Mallard, K, Ramsay, A, Campino, S, Hibberd, M, Pain, A, Rigouts, L and Clark, T (2015). Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. [Data Collection]. European Nucleotide Archive. http://www.ebi.ac.uk/ena/data/view/PRJEB11653

Anderson, ST, Coin, LJ, Crampin, AC, Dockrell, HM, Eley, B, French, N, Heyderman, RS, Hibberd, ML, Kaforou, M, Kern, F, Langford, PR, Levin, M, Ling, L, Wilkinson, RJ and Wright, VJ (2013). Genome-wide transcriptional profiling of HIV positive and negative adults with active tuberculosis, latent TB infection and other diseases. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37250