Item Type Date Title No Grouping

Dengue virus type 4 isolate DET-P-0428-1 polyprotein (POLY) gene, complete cds; and sfRNA2 lncRNA gene, partial sequence. (2023) Ashall, James; Shah, Sonal; Biggs, Joseph R; Chang, Jui-Ning R; Jafari, Yalda; Brady, Oliver J.; Mai, Huynh Kim; Lien, Le Thuy; Do Thai, Hung; Nguyen, Hien Anh Thi; Anh, Dang Duc; Iwasaki, Chihiro; Kitamura, Noriko; Van Loock, Marnix; Herrera-Taracena, Guillermo; Rasschaert, Freya; Van Wesenbeeck, Liesbeth; Yoshida, Lay-Myint; Hafalla, Julius Clemence R; Hue, Stephane; Hibberd, Martin L.

Dengue virus type I isolate DEN-P-1098-1 polyprotein (POLY) gene, partial cds. (2023) Ashall, James; Shah, Sonal; Biggs, Joseph R; Chang, Jui-Ning R; Jafari, Yalda; Brady, Oliver J.; Mai, Huynh Kim; Lien, Le Thuy; Do Thai, Hung; Nguyen, Hien Anh Thi; Anh, Dang Duc; Iwasaki, Chihiro; Kitamura, Noriko; Van Loock, Marnix; Herrera-Taracena, Guillermo; Rasschaert, Freya; Van Wesenbeeck, Liesbeth; Yoshida, Lay-Myint; Hafalla, Julius Clemence R; Hue, Stephane; Hibberd, Martin L.

Demographic characteristics of the reporting study population at enrolment. (2022) Biggs, Joseph; Sy, Ava Kristy; Ashall, James; Santoso, Marsha S; Brady, Oliver J; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Tandoc, Amadou O; Sucaldito, Nemia L; Huynh, Kim Mai; Le, Thuy Lien; Hung, Do Thai; Nguyen, Hien Anh Thi; Dang, Duc Anh; Iwasaki, Chihiro; Kitamura, Noriko; Van Loock, Marnix; Herrera-Taracena, Guillermo; Menten, Joris; Rasschaert, Freya; Van Wesenbeeck, Liesbeth; Masyeni, Sri; Haryanto, Sotianingsih; Yohan, Benediktus; Cutiongco-de la Paz, Eva; Yoshida, Lay-Myint; Hue, Stephane; Capeding, Maria Rosario Z; Padilla, Carmencita D; Sasmono, R Tedjo; Hafalla, Julius Clemence R; Hibberd, Martin L

Sensitivity (95%CI) of NS1 RDTs in capturing DENV1-4 infections stratified by immune status among patients from Vietnam (N:1,217). (2022) Biggs, Joseph; Sy, Ava Kristy; Ashall, James; Santoso, Marsha S; Brady, Oliver J; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Tandoc, Amadou O; Sucaldito, Nemia L; Huynh, Kim Mai; Le, Thuy Lien; Hung, Do Thai; Nguyen, Hien Anh Thi; Dang, Duc Anh; Iwasaki, Chihiro; Kitamura, Noriko; Van Loock, Marnix; Herrera-Taracena, Guillermo; Menten, Joris; Rasschaert, Freya; Van Wesenbeeck, Liesbeth; Masyeni, Sri; Haryanto, Sotianingsih; Yohan, Benediktus; Cutiongco-de la Paz, Eva; Yoshida, Lay-Myint; Hue, Stephane; Capeding, Maria Rosario Z; Padilla, Carmencita D; Sasmono, R Tedjo; Hafalla, Julius Clemence R; Hibberd, Martin L

A summary of data collected from suspected dengue patients included in the study population from Indonesia, Vietnam and the Philippines. (2022) Biggs, Joseph R; Sy, Ava Kristy; Ashall, James; Santoso, Marsha S; Brady, Oliver J; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Tandoc, Amadou O; Sucaldito, Nemia L; Huynh, Kim Mai; Le, Thuy Lien; Hung, Do Thai; Nguyen, Hien Anh Thi; Dang, Duc Anh; Iwasaki, Chihiro; Kitamura, Noriko; Van Loock, Marnix; Herrera-Taracena, Guillermo; Menten, Joris; Rasschaert, Freya; Van Wesenbeeck, Liesbeth; Masyeni, Sri; Haryanto, Sotianingsih; Yohan, Benediktus; Cutiongco-de la Paz, Eva; Yoshida, Lay-Myint; Hue, Stephane; Capeding, Maria Rosario Z; Padilla, Carmencita D; Sasmono, R Tedjo; Hafalla, Julius Clemence R; Hibberd, Martin L

Data for: "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants". (2021) Lay, Christophe; Chu, Collins Wenhan; Purbojati, Rikky Wenang; Acerbi, Enzo; Drautz-Moses, Daniela I.; de Sessions, Paola Florez; Jie, Song; Ho, Eliza; Kok, Yee Jiun; Bi, Xuezhi; Chen, Shuwen; Mak, Shi Ya; Chua, Mei Chien; Goh, Anne E. N.; Chiang, Wen Chin; Rao, Rajeshwar; Chaithongwongwatthana, Surasith; Khemapech, Nipon; Chongsrisawat, Voranush; Martin, Rocio; Koh, Yanqing; Lohar, Sachin R.; Tan, Ivan Chin Hin; Anng, Wong Anng; Jie, Chen; Bartke, Nana; Ben-Amor, Kaouther; Renes, Ingrid B.; Wong, Fiona; Roeselers, Guus; Ho, Ying Swan; Hibberd, Martin L.; Schuster, Stephan C.; Knol, Jan

Identification of Reduced Host Transcriptomic Signatures for Tuberculosis Disease and Digital PCR-Based Validation and Quantification. (2021) Gliddon, Harriet D.; Kaforou, Myrsini; Alikian, Mary; Habgood-Coote, Dominic; Zhou, Chenxi; Oni, Tolu; Anderson, Suzanne T.; Brent, Andrew J.; Crampin, Amelia C.; Eley, Brian; Heyderman, Robert; Kern, Florian; Langford, Paul R.; Ottenhoff, Tom H. M.; Hibberd, Martin L.; French, Neil; Wright, Victoria J.; Dockrell, Hazel M.; Coin, Lachlan J.; Wilkinson, Robert J.; Levin, Michael

Risk factor profiles and clinical outcomes for children and adults with pneumococcal infections in Singapore: A need to expand vaccination policy? (2019) Martinez-Vega, Rosario; Jauneikaite, Elita; Thoon, Koh Cheng; Chua, Hui Ying; Huishi Chua, Amanda; Khong, Wei Xin; Tan, Ban Hock; Low Guek Hong, Jenny; Venkatachalam, Indumathi; Anantharajah Tambyah, Paul; Hibberd, Martin L.; Clarke, Stuart C.; Ng, Oon Tek

Risk factor profiles and clinical outcomes for children and adults with pneumococcal infections in Singapore: A need to expand vaccination policy? S1 Dataset. (2019) Martinez-Vega, Rosario; Jauneikaite, Elita; Koh, Cheng Thoon; Hui, Ying Chua; Huishi Chua, Amanda; Khong, Wei Xin; Ban Hock, Tan; Guek Hong, Jenny Low; Venkatachalam, Indumathi; Anantharajah Tambyah, Paul; Hibberd, Martin L.; Clarke, Stuart C.; Oon Tek, Ng

Additional file 1: of Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. (2019) Phelan, Jody; O’Sullivan, Denise M; Machado, Diana; Ramos, Jorge; Oppong, Yaa EA; Campino, Susana; O’Grady, Justin; McNerney, Ruth; Hibberd, Martin L; Viveiros, Miguel; Huggett, Jim F; Clark, Taane G.

Genome organization of dengue and Zika viruses. (2019) Sim, Adelene Y. L.; Huber, Roland G.; Lim, Xin Ni; Ng, Wy Ching; Chawla, Tanu; Aw, JG; Lim, Su Ying; Shen, Y; Boon, K; Choy, Milly M.; Wilm, Andreas; de Sessions, Paola Florez; Hibberd, Martin; Nagarajan, Niranjan; Ooi, Eng Eong; Bond, Peter J.; Sessions, October M.; Wan, Yue

adamkucharski/fiji-denv3-2014. (2018) Kucharski, Adam J; Kama, Mike; Watson, Conall H; Aubry, Maite; Funk, Sebastian; Henderson, Alasdair D; Brady, Oliver J; Vanhomwegen, Jessica; Manuguerra, Jean-Claude; Lau, Colleen L; Edmunds, W John; Aaskov, John; Nilles, Eric James; Cao-Lormeau, Van-Mai; Hue, Stephane; Hibberd, Martin L

Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. (2018) Palittapongarnpim, Prasit; Ajawatanawong, Pravech; Viratyosin, Wasna; Smittipat, Nat; Disratthakit, Areeya; Mahasirimongkol, Surakameth; Yanai, Hideki; Yamada, Norio; Nedsuwan, Supalert; Imasanguan, Worarat; Kantipong, Pacharee; Chaiyasirinroje, Boonchai; Wongyai, Jiraporn; Toyo-oka, Licht; Phelan, Jody; Parkhill, Julian; Clark, Taane G.; Hibberd, Martin L.; Ruengchai, Wuthiwat; Palittapongarnpim, Panawun; Juthayothin, Tada; Tongsima, Sissades; Tokunaga, Katsushi

Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. (2017) Diez Benavente, Ernest; Florez de Sessions, Paola; Moon, Robert W.; Holder, Anthony A.; Blackman, Michael J.; Roper, Cally; Drakeley, Christopher J.; Pain, Arnab; Sutherland, Colin J.; Hibberd, Martin L.; Campino, Susana; Clark, Taane G.

Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children. (2017) The, Hao Chung; Florez de Sessions, Paola; Jie, Song; Pham Thanh, Duy; Thompson, Corinne N; Nguyen Ngoc Minh, Chau; Chu, Collins Wenhan; Tran, Tuan-Anh; Thomson, Nicholas R; Thwaites, Guy E; Rabaa, Maia A; Hibberd, Martin; Baker, Stephen

Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. (2017) Andreu, Nuria; Phelan, Jody; de Sessions, Paola F; Cliff, Jackie M.; Clark, Taane; Hibberd, Martin

PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. (2016) Chen, Feng; Wang, Shuang; Jiang, Xiaoqian; Ding, Sijie; Lu, Yao; Kim, Jihoon; Sahinalp, S. Cenk; Shimizu, Chisato; Burns, Jane C.; Wright, Victoria J.; Png, Eileen; Hibberd, Martin L.; Lloyd, David D.; Yang, Hai; Telenti, Amalio; Bloss, Cinnamon S.; Fox, Dov; Lauter, Kristin; Ohno-Machado, Lucila

Natural resistance to Meningococcal Disease related to CFH loci: Meta-analysis of genome-wide association studies. (2016) Martinón-Torres, Federico; Png, Eileen; Khor, Chiea Chuen; Davila, Sonia; Wright, Victoria J.; Sim, Kar Seng; Vega, Ana; Fachal, Laura; Inwald, David; Nadel, Simon; Carrol, Enitan D.; Martinón-Torres, Nazareth; Alonso, Sonia Marcos; Carracedo, Angel; Morteruel, Elvira; López-Bayón, Julio; Torre, Andrés Concha; Monge, Cristina Calvo; de Aguilar, Pilar Azcón González; Torné, Elisabeth Esteban; Martínez-Padilla, María del Carmen; Martinón-Sánchez, José María; Levin, Michael; Hibberd, Martin L.; Salas, Antonio

Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. (2015) Phelan, Jody; Coll, Francesc; Mcnerney, Ruth; Ascher, David B.; Pires, Douglas E. V.; Furnham, Nick; Coeck, Nele; Hill-Cawthorne, Grant A.; Nair, Mridul B.; Mallard, Kim; Ramsay, Andrew; Campino, Susana; Hibberd, Martin; Pain, Arnab; Rigouts, Leen; Clark, Taane description

Genome-wide transcriptional profiling of HIV positive and negative adults with active tuberculosis, latent TB infection and other diseases. (2013) Anderson, Suzanne T; Coin, Lachlan J; Crampin, Amelia C.; Dockrell, Hazel M.; Eley, Brian; French, Neil; Heyderman, Robert S.; Hibberd, Martin L.; Kaforou, Myrsini; Kern, Florian; Langford, Paul R.; Levin, M; Ling, Ling; Wilkinson, Robert J.; Wright, Victoria J.