Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain
, McQuiston, JR and Brisse, S
(2017).
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.
[Dataset].
Nature Communications.
https://doi.org/10.1038/ncomms15483
Supplementary files to a paper on evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain. The Excel files cover: Outbreak isolates and comparative strains included in the study, Single nucleotide polymorphisms (SNP) observed among outbreak isolates, Genomic features and annotations associated with the Wisconsin outbreak specific regions and deletion in 4 outbreak strains, Antimicrobial resistance features of the outbreak strain detected using ResFams, Virulence-associated features of the outbreak strain detected using the VFDB database, and Antimicrobial susceptibility values. The text file contain a SNP tree with node names. The XML files contain BEAST input file using cgMLST data, BEAST input file using SNP data.
Keywords
Elizabethkingia anophelis, Bacterial genetics, Bacterial infection, Pathogens| Item Type | Dataset |
|---|---|
| Capture method | Experiment: Field Intervention |
| Collection Period |
From To 2015 2016 |
| Date | 24 May 2017 |
| Language(s) of written materials | English |
| Creator(s) |
Perrin, A, Larsonneur, E, Nicholson, AC, Edwards, DJ, Gundlach, KM, Whitney, AM, Gulvik, CA, Bell, ME, Rendueles, O, Cury, J, Hugon, P, Clermont, D, Enouf, V, Loparev, V, Juieng, P, Monson, T, Warshauer, D, Elbadawi, LI, Walters, MS, Crist, MB, Noble-Wang, J, Borlaug, G, Rocha, EPC, Criscuolo, A, Touchon, M, Davis, JP, Holt, KE, McQuiston, JR and Brisse, S
|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology (-2019) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 05 Dec 2018 16:38 |
| Last Modified | 08 Jul 2021 12:50 |
| Publisher | Nature Communications |
No files available. Please consult associated links.
