Kucharski, A and Edmunds, J. 2015. Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code. [Online]. PLOS Computational Biology. Available from: http://doi.org/10.1371/journal.pcbi.1004154.s010
Kucharski, A and Edmunds, J. Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code [Internet]. PLOS Computational Biology; 2015. Available from: http://doi.org/10.1371/journal.pcbi.1004154.s010
Kucharski, A and Edmunds, J (2015). Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code. [Data Collection]. PLOS Computational Biology. http://doi.org/10.1371/journal.pcbi.1004154.s010
Description
Simulation and inference code written in R which generates stochastic multi type outbreaks from a two-class mixing matrix. The inference model generates maximum likelihood estimates of R0 and S from outbreak size data.
Data capture method | Simulation |
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Date (Date published in a 3rd party system) | 10 April 2015 |
Language(s) of written materials | English |
Data Creators | Kucharski, A and Edmunds, J |
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LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology |
Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
Date Deposited | 30 Oct 2015 16:20 |
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Last Modified | 08 Jul 2021 12:52 |
Publisher | PLOS Computational Biology |
Downloads
Study Instrument
Filename: S1_Code_Simulation_and_inference.txt
Description: Simulation and inference code
Content type: Software
File size: 7kB
Mime-Type: text/plain