Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code
Kucharski, A
and Edmunds, J
(2015).
Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code.
[Dataset].
PLOS Computational Biology.
http://doi.org/10.1371/journal.pcbi.1004154.s010
and Edmunds, J
(2015).
Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code.
[Dataset].
PLOS Computational Biology.
http://doi.org/10.1371/journal.pcbi.1004154.s010
Simulation and inference code written in R which generates stochastic multi type outbreaks from a two-class mixing matrix. The inference model generates maximum likelihood estimates of R0 and S from outbreak size data.
Keywords
Age groups, Immunity, Respiratory infections, Infectious disease epidemiology, Influenza, Monkeypox, Simulation and modeling, Pathogens| Item Type | Dataset |
|---|---|
| Capture method | Simulation |
| Date | 10 April 2015 |
| Language(s) of written materials | English |
| Creator(s) |
Kucharski, A and Edmunds, J
|
| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 30 Oct 2015 16:20 |
| Last Modified | 08 Jul 2021 12:52 |
| Publisher | PLOS Computational Biology |
S1_Code_Simulation_and_inference.txt
-
subject - Study Instrument
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
-
info - Simulation and inference code
description - text/plain
- folder_info
- 7kB
Downloads
