klebgenomics/SPINZ
and Holt, KE
(2025).
klebgenomics/SPINZ.
[Dataset].
Zenodo.
https://doi.org/10.5281/zenodo.17589084
Genomic analysis to assess the impact of an infection control bundle on K. pneumoniae populations causing sepsis in neonates in an ICU in Zambia. This paper uses data collected as part of the SPINZ study.
This repository includes data and code from the paper 'Transmission dynamics of Klebsiella pneumoniae in a neonatal intensive care unit in Zambia before and after an infection control bundle', Phillips LT et al, MedRxiv 2025.
Output phylogenetic trees are in output_trees/, single nucleotide variant distances are in output_snv_distances/ and cluster estimates in output_clusters/.
Additional data needed to create figures or tables is in data/.
Keywords
K. pneumoniae; Sepsis; Zambia| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Dataset Quantitative |
| Capture method | Other |
| Date | 12 November 2025 |
| Language(s) of written materials | English |
| Creator(s) |
Phillips, L and Holt, KE
|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Department of Infection Biology |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 13 Feb 2026 15:57 |
| Last Modified | 13 Feb 2026 16:00 |
| Publisher | Zenodo |
No files available. Please consult associated links.
