ecthomson/Contamination-Filter

Thomson, ECORCID logo (2025). ecthomson/Contamination-Filter. [Dataset]. Zenodo. https://doi.org/10.5281/zenodo.14860986
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This Bash script identifies identical viral reads across samples from the same sequencing run to detect potential cross-contamination. It processes .sam files, extracting and analyzing mapped sequences to identify commonalities that indicate contamination.

Keywords

viral reads, cross-contamination

Item Type Dataset
Capture method Other
Date 12 February 2025
Language(s) of written materials English
Creator(s) Thomson, ECORCID logo
LSHTM Faculty/Department Faculty of Infectious and Tropical Diseases > Dept of Clinical Research
Participating Institutions London School of Hygiene & Tropical Medicine, London, United Kingdom
Date Deposited 10 Feb 2025 12:08
Last Modified 03 Apr 2025 08:39
Publisher Zenodo

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