Thomson, EC. 2025. ecthomson/Contamination-Filter. [Online]. Zenodo. Available from: https://doi.org/10.5281/zenodo.14860986
Thomson, EC. ecthomson/Contamination-Filter [Internet]. Zenodo; 2025. Available from: https://doi.org/10.5281/zenodo.14860986
Thomson, EC (2025). ecthomson/Contamination-Filter. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.14860986
Description
This Bash script identifies identical viral reads across samples from the same sequencing run to detect potential cross-contamination. It processes .sam files, extracting and analyzing mapped sequences to identify commonalities that indicate contamination.
Keywords
| Data capture method | Other |
|---|---|
| Date (Published in a 3rd party system) | 12 February 2025 |
| Language(s) of written materials | English |
| Data Creators | Thomson, EC |
|---|---|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Clinical Research |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 10 Feb 2025 12:08 |
|---|---|
| Last Modified | 14 Feb 2025 09:45 |
| Publisher | Zenodo |
