Robert, A. 2022. alxsrobert/evd-transmission-trees. [Online]. Github. Available from: https://github.com/alxsrobert/evd-transmission-trees
Robert, A. alxsrobert/evd-transmission-trees [Internet]. Github; 2022. Available from: https://github.com/alxsrobert/evd-transmission-trees
Robert, A (2022). alxsrobert/evd-transmission-trees. [Data Collection]. Github. https://github.com/alxsrobert/evd-transmission-trees
Description
This repository contains the code to reproduce the analysis presented in the paper: Alexis Robert, Joseph Tsui Lok Hei, Conall H Watson et al, Quantifying the added value of viral genomics to infer who infected whom in the 2014-16 Ebola virus outbreak in Guinea. The main script of the repository (src/main_script.R) is used to generate simulated transmission trees (using the functions contained in src/function_generate_outbreaks.R), and analyse them using Outbreaker2. Finally, the main script generates the different figures included in the paper (using the functions contained in src/function_figures).
Keywords
| Data capture method | Unknown |
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| Date (Date published in a 3rd party system) | 20 April 2022 |
| Language(s) of written materials | English |
| Data Creators | Robert, A |
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| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 04 Apr 2023 11:53 |
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| Last Modified | 04 Apr 2023 11:53 |
| Publisher | Github |
