alxsrobert/evd-transmission-trees

Robert, AORCID logo (2022). alxsrobert/evd-transmission-trees. [Dataset]. Github. https://github.com/alxsrobert/evd-transmission-trees
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This repository contains the code to reproduce the analysis presented in the paper: Alexis Robert, Joseph Tsui Lok Hei, Conall H Watson et al, Quantifying the added value of viral genomics to infer who infected whom in the 2014-16 Ebola virus outbreak in Guinea. The main script of the repository (src/main_script.R) is used to generate simulated transmission trees (using the functions contained in src/function_generate_outbreaks.R), and analyse them using Outbreaker2. Finally, the main script generates the different figures included in the paper (using the functions contained in src/function_figures).

Keywords

Ebola

Item Type Dataset
Capture method Unknown
Date 20 April 2022
Language(s) of written materials English
Creator(s) Robert, AORCID logo
LSHTM Faculty/Department Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023)
Participating Institutions London School of Hygiene & Tropical Medicine, London, United Kingdom
Date Deposited 04 Apr 2023 11:53
Last Modified 04 Apr 2023 11:53
Publisher Github

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