katholt/srst2

Inouye, M, Dashnow, H, Pope, B, Wick, R and Holt, KE

(2021). katholt/srst2. [Dataset]. Github. https://github.com/katholt/srst2

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Short Read Sequence Typing for Bacterial Pathogens. This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Keywords

Short Read Sequence, Bacterial pathogens

Item Type	Dataset
Capture method	Other
Date	20 June 2021
Language(s) of written materials	English
Creator(s)	Inouye, M, Dashnow, H, Pope, B, Wick, R and Holt, KE
LSHTM Faculty/Department	Faculty of Infectious and Tropical Diseases > Department of Infection Biology
Research Centre	Antimicrobial Resistance Centre (AMR)
Participating Institutions	London School of Hygiene & Tropical Medicine, London, United Kingdom
Date Deposited	03 Oct 2022 13:14
Last Modified	03 Oct 2022 13:14
Publisher	Github

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Holt, Kathryn E.

Department of Infection Biology

Antimicrobial Resistance Centre (AMR)

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