Additional file 11 of Impact of industrial production system parameters on chicken microbiomes: mechanisms to improve performance and reduce Campylobacter

McKenna, A, Ijaz, UZ, Kelly, C, Linton, M, Sloan, WT, Green, BD, Lavery, U, Dorrell, NORCID logo, Wren, BWORCID logo, Richmond, A, Corcionivoschi, N and Gundogdu, OORCID logo (2020). Additional file 11 of Impact of industrial production system parameters on chicken microbiomes: mechanisms to improve performance and reduce Campylobacter. [Dataset]. Figshare. https://doi.org/10.6084/m9.figshare.12936381.v1
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Additional file 11: Supplementary S11-Pairwise Differential Analysis.xlsx: Differential analysis of genera that are up/down-regulated between different groups (Adjusted P values ≤0.05) with at least log2 fold change from the base mean abundances for the samples considered in the first column.

Keywords

Chicken; Microbiome; Campylobacter; Production systems; Environmental filtering; Phylogenetic signal; Competitive exclusion; Diversity

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