Additional file 11 of Impact of industrial production system parameters on chicken microbiomes: mechanisms to improve performance and reduce Campylobacter

McKenna, A, Ijaz, UZ, Kelly, C, Linton, M, Sloan, WT, Green, BD, Lavery, U, Dorrell, NORCID logo, Wren, BWORCID logo, Richmond, A, Corcionivoschi, N and Gundogdu, OORCID logo (2020). Additional file 11 of Impact of industrial production system parameters on chicken microbiomes: mechanisms to improve performance and reduce Campylobacter. [Dataset]. Figshare. https://doi.org/10.6084/m9.figshare.12936381.v1
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Additional file 11: Supplementary S11-Pairwise Differential Analysis.xlsx: Differential analysis of genera that are up/down-regulated between different groups (Adjusted P values ≤0.05) with at least log2 fold change from the base mean abundances for the samples considered in the first column.

Keywords

Chicken, Microbiome, Campylobacter, Production systems, Environmental filtering, Phylogenetic signal, Competitive exclusion, Diversity

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