Spadar, A, Phelan, J, Diez-Benavente, E, Campos, M, Gomez, LF, Mohareb, F, Clark, TG and Campino, S. 2021. Data for: "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus". [Online]. London School of Hygiene & Tropical Medicine, London, United Kingdom. Available from: https://doi.org/10.17037/DATA.00002482.
Spadar, A, Phelan, J, Diez-Benavente, E, Campos, M, Gomez, LF, Mohareb, F, Clark, TG and Campino, S. Data for: "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus" [Internet]. London School of Hygiene & Tropical Medicine; 2021. Available from: https://doi.org/10.17037/DATA.00002482.
Spadar, A, Phelan, J, Diez-Benavente, E, Campos, M, Gomez, LF, Mohareb, F, Clark, TG and Campino, S (2021). Data for: "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002482.
Description
Supplementary material published to support a paper titled "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus". It includes: (1) descriptive statistics of excluded and retained sequences; (2) BLASTN results processing flow diagram; (3) an Excel spreadsheet containing BLASTN hits from AaegL5 assembly; (4) an Excel spreadsheet containing accession IDs of all used flavivirus genomes; (5) an Excel spreadsheet listing BLASTN hits from AaloF2 assembly; (6) an Excel spreadsheet listing EVE coordinates and sequences identified in AaloF2; and (7) EVE bedfiles for AaegL5 and AaloF2 assemblies; phylogenetic trees and corresponding metadata for Ae. aegypti EVEs and cox1 gene.
Keywords
| Data capture method | Unknown |
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| Date (Published in a 3rd party system) | 27 June 2021 |
| Language(s) of written materials | English |
| Data Creators | Spadar, A, Phelan, J, Diez-Benavente, E, Campos, M, Gomez, LF, Mohareb, F, Clark, TG and Campino, S |
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| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 02 Sep 2021 09:26 |
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| Last Modified | 03 Sep 2021 10:41 |
| Publisher | London School of Hygiene & Tropical Medicine |
