Data for: "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus"
Supplementary material published to support a paper titled "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus". It includes: (1) descriptive statistics of excluded and retained sequences; (2) BLASTN results processing flow diagram; (3) an Excel spreadsheet containing BLASTN hits from AaegL5 assembly; (4) an Excel spreadsheet containing accession IDs of all used flavivirus genomes; (5) an Excel spreadsheet listing BLASTN hits from AaloF2 assembly; (6) an Excel spreadsheet listing EVE coordinates and sequences identified in AaloF2; and (7) EVE bedfiles for AaegL5 and AaloF2 assemblies; phylogenetic trees and corresponding metadata for Ae. aegypti EVEs and cox1 gene.
Keywords
Mosquito, Aedes, Flavivirus, Arbovirus, Endogenous viral elementItem Type | Dataset |
---|---|
Capture method | Unknown |
Date | 27 June 2021 |
Language(s) of written materials | English |
Creator(s) |
Spadar, A |
LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019) |
Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
Date Deposited | 02 Sep 2021 09:26 |
Last Modified | 03 Sep 2021 10:41 |
Publisher | London School of Hygiene & Tropical Medicine |
Explore Further
- File 1 - Descriptive statistics of excluded and retained sequences (Data)
- File 2 - BLASTN results processing flow diagram (Data)
- File 3 - All BLASTN hits from AaegL5 assembly (Data)
- File 4 - Accession IDs of all used flavivirus genomes (Data)
- File 5 - All BLASTN hits from AaloF2 assembly (Data)
- File 6 - EVE coordinates and sequences identified in AaloF2 (Data)
- File 7 - EVE bedfiles for AaegL5 and AaloF2 assemblies (Data)
- 10.17037/DATA.00002482 (DOI)
No files available. Please consult associated links.
- File 1 - Descriptive statistics of excluded and retained sequences (Data)
- File 2 - BLASTN results processing flow diagram (Data)
- File 3 - All BLASTN hits from AaegL5 assembly (Data)
- File 4 - Accession IDs of all used flavivirus genomes (Data)
- File 5 - All BLASTN hits from AaloF2 assembly (Data)
- File 6 - EVE coordinates and sequences identified in AaloF2 (Data)
- File 7 - EVE bedfiles for AaegL5 and AaloF2 assemblies (Data)
- 10.17037/DATA.00002482 (DOI)