Data for: "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus"

Spadar, AORCID logo, Phelan, JORCID logo, Diez-Benavente, EORCID logo, Campos, M, Gomez, LF, Mohareb, F, Clark, TGORCID logo and Campino, SORCID logo (2021). Data for: "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus". [Dataset]. London School of Hygiene & Tropical Medicine, London, United Kingdom. 10.17037/DATA.00002482.
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Supplementary material published to support a paper titled "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus". It includes: (1) descriptive statistics of excluded and retained sequences; (2) BLASTN results processing flow diagram; (3) an Excel spreadsheet containing BLASTN hits from AaegL5 assembly; (4) an Excel spreadsheet containing accession IDs of all used flavivirus genomes; (5) an Excel spreadsheet listing BLASTN hits from AaloF2 assembly; (6) an Excel spreadsheet listing EVE coordinates and sequences identified in AaloF2; and (7) EVE bedfiles for AaegL5 and AaloF2 assemblies; phylogenetic trees and corresponding metadata for Ae. aegypti EVEs and cox1 gene.

Keywords

Mosquito; Aedes; Flavivirus; Arbovirus; Endogenous viral element


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