MOESM4 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population

Ochola-Oyier, LI, Okombo, J, Wagatua, N, Ochieng, J, Tetteh, KK, Fegan, G, Bejon, P and Marsh, K. 2016. MOESM4 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population. [Online]. Figshare. Available from: https://doi.org/10.6084/m9.figshare.c.3603686_D5.v1

Ochola-Oyier, LI, Okombo, J, Wagatua, N, Ochieng, J, Tetteh, KK, Fegan, G, Bejon, P and Marsh, K. MOESM4 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population [Internet]. Figshare; 2016. Available from: https://doi.org/10.6084/m9.figshare.c.3603686_D5.v1

Ochola-Oyier, LI, Okombo, J, Wagatua, N, Ochieng, J, Tetteh, KK, Fegan, G, Bejon, P and Marsh, K (2016). MOESM4 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3603686_D5.v1

Description

Keywords

Methods

Data capture method Experiment
Data Collection Period
FromTo
20072009
Date (Date published in a 3rd party system) 6 May 2016
Geographical area covered (offline during plugin upgrade)
North LatitudeEast LongitudeSouth LatitudeWest Longitude
-3.3692739.9332-3.625639.8042
Language(s) of written materials English

People & Groups

Data Creators Ochola-Oyier, LI, Okombo, J, Wagatua, N, Ochieng, J, Tetteh, KK, Fegan, G, Bejon, P and Marsh, K
LSHTM Faculty/Department Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019)
Participating Institutions KEMRI-Wellcome Trust Collaborative Programme, London School of Hygiene & Tropical Medicine, London, United Kingdom

Projects

Additional Information

Date Deposited 18 May 2016 11:34
Last Modified 04 Oct 2024 09:27
Publisher Figshare

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Data / Code

File1-PCRconditions_and_PrimerSequences Download

Filename: File1-PCRconditions_and_PrimerSequences.xlsx

Description: PCR conditions and primer sequences for the gene regions analysed in the 15 merozoite genes

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Content type: Dataset

File size: 17kB

Mime-Type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

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File2-Merozoite_gene Download

Filename: File2-Merozoite_gene.docx

Description: Merozoite gene allele frequencies in the uncomplicated malaria infections between 2007 and 2008

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Content type: Dataset

File size: 21kB

Mime-Type: application/vnd.openxmlformats-officedocument.wordprocessingml.document

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File3-genotypeParasitePairs Download

Filename: File3-genotypeParasitePairs.docx

Description: The proportion of same and different genotype parasite pairs in vivo and in vitro

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Content type: Dataset

File size: 21kB

Mime-Type: application/vnd.openxmlformats-officedocument.wordprocessingml.document

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File4-LD_analysis Download

Filename: File4-LD_analysis.xlsx

Description: Linkage disequilibrium (LD) analysis of all high frequency (>5%) SNPs in all 15 merozoite genes, except eba181 due to limited SNP data

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Content type: Dataset

File size: 347kB

Mime-Type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

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File5-SNPs_RepeatRegionFrequencies Download

Filename: File5-SNPs_RepeatRegionFrequencies.xlsx

Description: SNPs and repeat region frequencies within the 15 merozoite genes from the uncomplicated malaria infections in 2007 and 2008 to identify significant SNPs

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Content type: Dataset

File size: 47kB

Mime-Type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

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File6_Rh5_SNPs Download

Filename: File6_Rh5_SNPs.docx

Description: Rh5 SNPs in 11 geographically distinct laboratory isolates

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Content type: Dataset

File size: 12kB

Mime-Type: application/vnd.openxmlformats-officedocument.wordprocessingml.document

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External resources

Figshare: Merozoite gene allele frequencies (Data)

Figshare: PCR conditions and primer sequences for gene regions (Data)

Figshare: SNPs and repeat region frequencies within merozoite genes (Data)

Figshare: Linkage disequilibrium analysis of high frequency SNPs (Online Data Resource)

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