MOESM4 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population
Ochola-Oyier, LI, Okombo, J, Wagatua, N, Ochieng, J, Tetteh, KK
, Fegan, G, Bejon, P and Marsh, K
(2016).
MOESM4 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population.
[Dataset].
Figshare.
https://doi.org/10.6084/m9.figshare.c.3603686_D5.v1
, Fegan, G, Bejon, P and Marsh, K
(2016).
MOESM4 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population.
[Dataset].
Figshare.
https://doi.org/10.6084/m9.figshare.c.3603686_D5.v1
Linkage disequilibrium (LD) analysis of all high frequency (>5%) SNPs in all 15 merozoite genes, except eba181 due to limited SNP data. The analysis was performed by conducting all possible pair-wise comparisons between all the SNPs across 14 merozoite genes using a pair-wise correlation analysis and a Bonferroni correction for multiple comparisons. The red boxes represent significant correlations between SNPs and thus SNPs in LD, orange represents correlations between SNPs that are not significant, white indicates the SNPs that are not correlated and therefore they are not in LD and grey represents cases where the SNP data is missing in one or both of the paired SNPs.
Keywords
Rh5, Merozoite, Plasmodium, Malaria| Item Type | Dataset |
|---|---|
| Capture method | Experiment |
| Collection Period |
From To 2007 2009 |
| Date | 6 May 2016 |
| Geographical area covered (offline during plugin upgrade) |
North Latitude East Longitude South Latitude West Longitude -3.36927 39.9332 -3.6256 39.8042 |
| Language(s) of written materials | English |
| Creator(s) |
Ochola-Oyier, LI, Okombo, J, Wagatua, N, Ochieng, J, Tetteh, KK, Fegan, G, Bejon, P and Marsh, K
|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019) |
| Participating Institutions | KEMRI-Wellcome Trust Collaborative Programme, London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 18 May 2016 11:34 |
| Last Modified | 04 Oct 2024 09:27 |
| Publisher | Figshare |
File1-PCRconditions_and_PrimerSequences.xlsx
-
subject - Data
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
-
info - PCR conditions and primer sequences for the gene regions analysed in the 15 merozoite genes
grid_on - application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
- folder_info
- 17kB
File2-Merozoite_gene.docx
-
subject - Data
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
-
info - Merozoite gene allele frequencies in the uncomplicated malaria infections between 2007 and 2008
description - application/vnd.openxmlformats-officedocument.wordprocessingml.document
- folder_info
- 21kB
File3-genotypeParasitePairs.docx
-
subject - Data
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
-
info - The proportion of same and different genotype parasite pairs in vivo and in vitro
description - application/vnd.openxmlformats-officedocument.wordprocessingml.document
- folder_info
- 21kB
File4-LD_analysis.xlsx
-
subject - Data
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
-
info - Linkage disequilibrium (LD) analysis of all high frequency (>5%) SNPs in all 15 merozoite genes, except eba181 due to limited SNP data
grid_on - application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
- folder_info
- 347kB
File5-SNPs_RepeatRegionFrequencies.xlsx
-
subject - Data
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
-
info - SNPs and repeat region frequencies within the 15 merozoite genes from the uncomplicated malaria infections in 2007 and 2008 to identify significant SNPs
grid_on - application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
- folder_info
- 47kB
File6_Rh5_SNPs.docx
-
subject - Data
- Creative Commons: Attribution
- Available under Creative Commons: Attribution 3.0
-
info - Rh5 SNPs in 11 geographically distinct laboratory isolates
description - application/vnd.openxmlformats-officedocument.wordprocessingml.document
- folder_info
- 12kB
Downloads
