Kleborate

Holt, KE. 2020. Kleborate. [Online]. Github. Available from: https://github.com/katholt/Kleborate

Holt, KE. Kleborate [Internet]. Github; 2020. Available from: https://github.com/katholt/Kleborate

Holt, KE (2020). Kleborate. [Data Collection]. Github. https://github.com/katholt/Kleborate

Description

Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for: MLST sequence type; species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.); ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb); virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2); antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations; K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive.

Methods

Data capture method	Other
Date (Date published in a 3rd party system)	20 August 2020
Language(s) of written materials	English

People & Groups

Data Creators	Holt, KE
LSHTM Faculty/Department	Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019)
Participating Institutions	London School of Hygiene & Tropical Medicine, London, United Kingom