Brodrick, HJ, Raven, KE, Harrison, EM, Blane, B, Reuter, S, Török, ME, Parkhill, J and Peacock, S. 2016. Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network. [Online]. Figshare. Available from: https://doi.org/10.6084/m9.figshare.c.3641945_D1.v1
Brodrick, HJ, Raven, KE, Harrison, EM, Blane, B, Reuter, S, Török, ME, Parkhill, J and Peacock, S. Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network [Internet]. Figshare; 2016. Available from: https://doi.org/10.6084/m9.figshare.c.3641945_D1.v1
Brodrick, HJ, Raven, KE, Harrison, EM, Blane, B, Reuter, S, Török, ME, Parkhill, J and Peacock, S (2016). Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3641945_D1.v1
Description
Data supporting a publication on use of Bacterial whole-genome sequencing (WGS) to identify transmission of vancomycin-resistant enterococci (VRE) within a long-term care facility (LTCF) and acute hospital in the United Kingdom. It includes a list of accession numbers assigned to study isolates submitted to the European Nucleotide Archive, as well as a phylogenetic tree of the 51 VRE and 25 VSE isolates based on core genome SNPs.
Data capture method | Experiment: Laboratory | ||||||||
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Date (Date published in a 3rd party system) | 12 January 2016 | ||||||||
Geographical area covered (offline during plugin upgrade) |
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Language(s) of written materials | English |
Data Creators | Brodrick, HJ, Raven, KE, Harrison, EM, Blane, B, Reuter, S, Török, ME, Parkhill, J and Peacock, S |
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LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Administration |
Research Group | Bloomsbury Research Institute, Wellcome Trust Sanger Institute |
Participating Institutions | University of Cambridge, Cambridge, United Kingdom, Addenbrooke’s Hospital, London School of Hygiene & Tropical Medicine, London, United Kingdom, Wellcome Trust Sanger Institute, London, United Kingdom |
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Date Deposited | 01 Mar 2016 10:22 |
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Last Modified | 03 Jun 2021 14:25 |
Publisher | Figshare |
Downloads
Data / Code
Filename: Isolates_Accession_Number.csv
Description: Table detailing the accession numbers of isolates used within the study
Content type: Dataset
File size: 4kB
Mime-Type: text/plain
Data Visualisation
Filename: Phylogeny_figure.pdf
Description: Figure depicting the phylogeny and relatedness of VRE and VSE carried in stool by study participants
Content type: Still Image
File size: 171kB
Mime-Type: application/pdf