Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network

Brodrick, HJ, Raven, KE, Harrison, EM, Blane, B, Reuter, S, Török, ME, Parkhill, J and Peacock, S (2016). Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network. [Dataset]. Figshare. https://doi.org/10.6084/m9.figshare.c.3641945_D1.v1
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Data supporting a publication on use of Bacterial whole-genome sequencing (WGS) to identify transmission of vancomycin-resistant enterococci (VRE) within a long-term care facility (LTCF) and acute hospital in the United Kingdom. It includes a list of accession numbers assigned to study isolates submitted to the European Nucleotide Archive, as well as a phylogenetic tree of the 51 VRE and 25 VSE isolates based on core genome SNPs.

Keywords

Vancomycin-resistant enterococci, Enterococcus faecium

Item Type Dataset
Capture method Experiment: Laboratory
Collection Period
From
To
2010
2014
Date 12 January 2016
Geographical area covered (offline during plugin upgrade)
North Latitude
East Longitude
South Latitude
West Longitude
52.3635
0.354309
52.1179
-0.123596
Language(s) of written materials English
Creator(s) Brodrick, HJ, Raven, KE, Harrison, EM, Blane, B, Reuter, S, Török, ME, Parkhill, J and Peacock, S
LSHTM Faculty/Department Faculty of Infectious and Tropical Diseases > Administration
Research Group Bloomsbury Research Institute, Wellcome Trust Sanger Institute
Participating Institutions University of Cambridge, Cambridge, United Kingdom, Addenbrooke’s Hospital, London School of Hygiene & Tropical Medicine, London, United Kingdom, Wellcome Trust Sanger Institute, London, United Kingdom
Funders
Project
Funder
Grant Number
Funder URI
UNSPECIFIED
Department of Health, United Kingdom
UNSPECIFIED
http://dx.doi.org/10.13039/501100000276
UNSPECIFIED
Wellcome Trust
UNSPECIFIED
http://dx.doi.org/10.13039/100010269
Date Deposited 01 Mar 2016 10:22
Last Modified 03 Jun 2021 14:25
Publisher Figshare

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Isolates_Accession_Number.csv
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Data
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Table detailing the accession numbers of isolates used within the study
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Phylogeny_figure.pdf
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Graphical representation of data
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Figure depicting the phylogeny and relatedness of VRE and VSE carried in stool by study participants
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