London School of Hygiene & Tropical Medicine. 2019. Genome-wide analysis of population structure and adaptation of Plasmodium knowlesi in peninsular Malaysia. [Online]. European Nucleotide Archive. Available from: https://www.ebi.ac.uk/ena/data/view/PRJEB33025
London School of Hygiene & Tropical Medicine. Genome-wide analysis of population structure and adaptation of Plasmodium knowlesi in peninsular Malaysia [Internet]. European Nucleotide Archive; 2019. Available from: https://www.ebi.ac.uk/ena/data/view/PRJEB33025
London School of Hygiene & Tropical Medicine (2019). Genome-wide analysis of population structure and adaptation of Plasmodium knowlesi in peninsular Malaysia. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB33025
Alternative Title
PRJEB33025
Description
Almost all malaria in Malaysia is now caused by Plasmodium knowlesi, a zoonotic parasite species consisting of at least three divergent genetic populations, two occurring in Borneo and a third causing all cases in mainland Peninsular Malaysia. To investigate the genetic structure in depth and test for evidence of recent adaptation on the mainland, clinical samples of P. knowlesi infections were obtained from malaria patients presenting to hospitals in three states within Peninsular Malaysia. Whole-genome sequence data with high read coverage were generated from 28 of the infections from five different hospitals, and as anticipated, all the parasites belong to the third genetic population termed Cluster 3.
Additional information
Secondary ID: ERP115778
Keywords
| Data capture method | Experiment |
|---|---|
| Date (Date published in a 3rd party system) | 12 June 2019 |
| Language(s) of written materials | English |
| Data Creators | London School of Hygiene & Tropical Medicine |
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| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Administration |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 01 May 2020 11:29 |
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| Last Modified | 01 May 2020 11:29 |
| Publisher | European Nucleotide Archive |
