Obolski, U, Perez, PN, Villabona Arenas, J, Thézé, J, Faria, NR and Lourenço, J. 2019. MVSE: An R‐package that estimates a climate‐driven mosquito‐borne viral suitability index. [Online]. Methods in Ecology and Evolution. Available from: https://doi.org/10.1111/2041-210X.13205
Obolski, U, Perez, PN, Villabona Arenas, J, Thézé, J, Faria, NR and Lourenço, J. MVSE: An R‐package that estimates a climate‐driven mosquito‐borne viral suitability index [Internet]. Methods in Ecology and Evolution; 2019. Available from: https://doi.org/10.1111/2041-210X.13205
Obolski, U, Perez, PN, Villabona Arenas, J, Thézé, J, Faria, NR and Lourenço, J (2019). MVSE: An R‐package that estimates a climate‐driven mosquito‐borne viral suitability index. [Data Collection]. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.13205
Description
Viruses, such as dengue, Zika, yellow fever and chikungunya, depend on mosquitoes for transmission. Their epidemics typically present periodic patterns, linked to the underlying mosquito population dynamics, which are known to be driven by natural climate fluctuations. Understanding how climate dictates the timing and potential of viral transmission is essential for preparedness of public health systems and design of control strategies. While various alternative approaches have been proposed to estimate local transmission potential of such viruses, few open‐source, ready to use and freely available software tools exist.
We developed the Mosquito‐borne Viral Suitability Estimator (MVSE) software package for the R programming environment. MVSE estimates the index P, a novel suitability index based on a climate‐driven mathematical expression for the basic reproductive number of mosquito‐borne viruses. By accounting for local humidity and temperature, as well as viral, vector and human priors, the index P can be estimated for specific host and viral species in different regions of the globe.
We describe the background theory, empirical support and biological interpretation of the index P. Using real‐world examples spanning multiple epidemiological contexts, we further demonstrate MVSE's basic functionality, research and educational potentials.
Data capture method | Experiment |
---|---|
Date (Date published in a 3rd party system) | 10 May 2019 |
Language(s) of written materials | English |
Data Creators | Obolski, U, Perez, PN, Villabona Arenas, J, Thézé, J, Faria, NR and Lourenço, J |
---|---|
LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology |
Research Centre | Centre for the Mathematical Modelling of Infectious Diseases |
Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
Funders |
|
---|
Date Deposited | 18 Jul 2019 09:29 |
---|---|
Last Modified | 08 Jul 2021 12:50 |
Publisher | Methods in Ecology and Evolution |