Russell, TW and Kucharski, AJ. 2024. thimotei/legacy_nAb_kinetics. [Online]. Github. Available from: https://github.com/thimotei/legacy_nAb_kinetics/
Russell, TW and Kucharski, AJ. thimotei/legacy_nAb_kinetics [Internet]. Github; 2024. Available from: https://github.com/thimotei/legacy_nAb_kinetics/
Russell, TW and Kucharski, AJ (2024). thimotei/legacy_nAb_kinetics. [Data Collection]. Github. https://github.com/thimotei/legacy_nAb_kinetics/
Description
Code and data for the underlying model outlined in the "Real-time estimation of immunological responses against emerging SARS-CoV-2 variants". The underlying antibody kinetics model is written in Stan. We use cmdstan, called from R using the cmdstanr package. We use data.table for our data manipulation throughout and ggplot2 for all plots. Lastly, for extracting the posterior samples in a user-friendly and simple manner, we ubiquitously use the tidybayes package.
Keywords
| Data capture method | Other |
|---|---|
| Date (Date published in a 3rd party system) | 18 July 2024 |
| Language(s) of written materials | English |
| Data Creators | Russell, TW and Kucharski, AJ |
|---|---|
| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology & Dynamics (2023-) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 29 Oct 2024 16:13 |
|---|---|
| Last Modified | 29 Oct 2024 16:13 |
| Publisher | Github |
