Russell, TW, Golding, N, Hellewell, J, Abbott, S, Pearson, CAB, Van zandvoort, K, Jarvis, CI, Gibbs, H, Liu, Y, Eggo, RM, Edmunds, WJ, Kucharski, AJ and CMMID COVID-19 working group. 2020. Reconstructing the global dynamics of unreported COVID-19 cases and infections. [Online]. Github. Available from: https://github.com/thimotei/covid_underreporting
Russell, TW, Golding, N, Hellewell, J, Abbott, S, Pearson, CAB, Van zandvoort, K, Jarvis, CI, Gibbs, H, Liu, Y, Eggo, RM, Edmunds, WJ, Kucharski, AJ and CMMID COVID-19 working group. Reconstructing the global dynamics of unreported COVID-19 cases and infections [Internet]. Github; 2020. Available from: https://github.com/thimotei/covid_underreporting
Russell, TW, Golding, N, Hellewell, J, Abbott, S, Pearson, CAB, Van zandvoort, K, Jarvis, CI, Gibbs, H, Liu, Y, Eggo, RM, Edmunds, WJ, Kucharski, AJ and CMMID COVID-19 working group (2020). Reconstructing the global dynamics of unreported COVID-19 cases and infections. [Data Collection]. Github. https://github.com/thimotei/covid_underreporting
Alternative Title
thimotei/covid_underreporting
Description
Using reported data on COVID-19 cases and fatalities globally, we estimated the proportion of symptomatic cases that were reported in 210 countries and territories. We then use these estimates to attempt to reconstruct the pandemic. The repo contains all the functions and scripts required to reproduce the results of (this paper) [https://cmmid.github.io/topics/covid19/Under-Reporting.html]. Specifically, the functions and scripts in this repo are for: downloading the required data from the ECDC here
importing the estimates from the bayesian inference model which forms the basis for the paper, the code and estimates for which can be found here combining the data and estimates to adjust the case curves producing all figures in the manuscript
| Data capture method | Simulation |
|---|---|
| Date (Date published in a 3rd party system) | 8 July 2020 |
| Language(s) of written materials | English |
| Data Creators | Russell, TW, Golding, N, Hellewell, J, Abbott, S, Pearson, CAB, Van zandvoort, K, Jarvis, CI, Gibbs, H, Liu, Y, Eggo, RM, Edmunds, WJ, Kucharski, AJ and CMMID COVID-19 working group |
|---|---|
| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology |
| Research Centre | Centre for the Mathematical Modelling of Infectious Diseases |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom, Telethon Kids Institute and Curtin University, Perth, Western Australia |
| Funders |
|
|---|
| Date Deposited | 24 Jul 2020 11:36 |
|---|---|
| Last Modified | 08 Jul 2021 12:52 |
| Publisher | Github |
