Data Creators(s) Item Type No Grouping

New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation. (2015) De Maio, Nicola, Wu, Chieh-Hsi, O'Reilly, Kathleen M., Wilson, Daniel

Accession numbers and data for S. Typhi sequences used in this study. (2022) Dyson, Zoe Anne, Malau, Elisheba, Horwood, Paul F, Ford, Rebecca, Siba, Valentine, Yoannes, Mition, Pomat, William, Passey, Megan, Judd, Louise M, Ingle, Danielle J, Williamson, Deborah A, Dougan, Gordon, Greenhill, Andrew R, Holt, Kathryn E

Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence. (2022) Dyson, Zoe Anne, Malau, Elisheba, Horwood, Paul F, Ford, Rebecca, Siba, Valentine, Yoannes, Mition, Pomat, William, Passey, Megan, Judd, Louise M, Ingle, Danielle J, Williamson, Deborah A, Dougan, Gordon, Greenhill, Andrew R, Holt, Kathryn E

Outgroups used for phylogenetic tree rooting. (2022) Dyson, Zoe Anne, Malau, Elisheba, Horwood, Paul F, Ford, Rebecca, Siba, Valentine, Yoannes, Mition, Pomat, William, Passey, Megan, Judd, Louise M, Ingle, Danielle J, Williamson, Deborah A, Dougan, Gordon, Greenhill, Andrew R, Holt, Kathryn E

Profile of the organisms selected for sequencing. (2021) Guevara, Paula Diaz, Maes, Mailis, Thanh, Duy Pham, Duarte, Carolina, Rodriguez, Edna Catering, Montaño, Lucy Angeline, Dan, Thanh Ho Ngoc, Nguyen, To Nguyen Thi, Carey, Megan E, Campos, Josefina, Chinen, Isabel, Perez, Enrique, Baker, Stephen

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2014) Jombart, Thibaut, Cori, Anne, Didelot, Xavier, Cauchemez, Simon, Fraser, Christophe, Ferguson, Neil

Phylogenetic and epidemiologic data relating to age-specific HIV incidence and transmission in Rakai, Uganda, 2003-2018. (2023) Monod, Melodie, Brizzi, Andrea, Galiwango, Ronald, Ssekubugu, Robert, Chen, Yu, Xi, XIaoyue, Kankaka, Edward Nelson, Ssempijja, Victor, Abeler-Dörner, Lucie, Akullian, Adam, Pereira Blenkinsop, Alexandra, Bonsall, David, Chang, Larry, Dan, Shozen, Fraser, Christopher, Golubchik, Tanya, Gray, Ronald, Jackson, Jade, Kigozi, Godfrey, Laeyendecker, Oliver, Mills, Lisa, Quinn, Thomas, Reynolds, Steven J., Santelli, John, Sewankambo, Nelson, Spencer, Simon, Ssekasanvu, Joseph, Waver, Maria, Serwadda, David, Godfrey-Faussett, Peter, Kagaayi, Joseph, Grabowski, Mary Kate, Ratmann, Oliver, Rakai Health Sciences Program, PANGEA-HIV consortium

Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in urban Dhaka, Bangladesh from 2004 to 2016. (2020) Rahman, Sadia Isfat Ara, Dyson, Zoe A., Klemm, Elizabeth J., Khanam, Farhana, Holt, Kathryn E., Chowdhury, Emran Kabir, Dougan, Gordon, Qadri, Firdausi

The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission. (2017) Ruis, Christopher, Roy, Sunando, Brown, Julianne R., Allen, David J., Goldstein, Richard A., Breuer, Judith

ecthomson/AFI. (2024) Thomson, Emma C.

Discovery of a Streptococcus pneumoniae serotype 33F capsular polysaccharide locus that lacks wcjE and contains a wcyO pseudogene. (2018) de Lencastre, Herminia, Manna, Sam, Dunne, Eileen M., Ortika, Belinda D., Pell, Casey L., Kama, Mike, Russell, Fiona M., Mungun, Tuya, Mulholland, Kim. E, Hinds, Jason, Satzke, Catherine