Data Collection

Ashton, P, Thanh, L, Trieu, P, Van Anh, D, Trinh, N, Beardsley, J, Kibengo, F, Chierakul, W, Dance, D, Rattanavong, S, Davong, V, Hung, L, Chau, N, Tung, N, Chan, A, Thwaites, G, Lalloo, D, Anscombe, C, Nhat, L, Perfect, J, Dougan, G, Baker, S, Harris, S and Day, J (2019). Three phylogenetic groups have driven the recent population expansion of Cryptococcus neoformans. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-10092-5

Chiner-Oms, Álvaro, Berney, M, Boinett, C, González-Candelas, F, Young, DB, Gagneux, S, Jacobs Jr, WR, Parkhill, J, Cortes, T and Comas, I (2019). Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-11948-6

Dorman, MJ, Domman, D, Poklepovich, T, Tolley, C, Zolezzi, G, Kane, L, Viñas, MR, Panagópulo, M, Moroni, M, Binsztein, N, Caffer, MI, Clare, S, Dougan, G, Salmond, GPC, Parkhill, J, Campos, J and Thomson, NR (2020). Supporting data for "Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11310131.v1

Evangelopoulos, D, Prosser, GA, Rodgers, A, Dagg, BM, Khatri, B, Ho, MM, Gutierrez, MG and Cortes, T (2019). Comparative fitness analysis of D-cycloserine resistant mutants reveals both fitness-neutral and high-fitness cost genotypes. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-12074-z

Gibb, R (2023). rorygibb/dengue_vietnam_ms: v1.0.0: Code base for Nature Communications MS. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10159288

Horton, KC, Dueger, EL, Kandeel, A, Abdallat, M, El-Kholy, A, Al-Awaidy, S, Kohlani, AH, Amer, H, El-Khal, AL, Said, M, House, B, Pimentel, G and Talaat, M (2017). S1 Dataset for "Viral etiology, seasonality and severity of hospitalized patients with severe acute respiratory infections in the Eastern Mediterranean Region, 2007–2014". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0180954.s002

Jombart, T, Cori, A, Didelot, X, Cauchemez, S, Fraser, C and Ferguson, N (2014). Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1003457

Kucharski, A and Edmunds, J (2015). Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code. [Data Collection]. PLOS Computational Biology. http://doi.org/10.1371/journal.pcbi.1004154.s010

Mobegi, V, Duffy, C, Amambua-Ngwa, A, Loua, KM, Laman, E, Nwakanma, DC, MacInnis, B, Aspeling-jones, H, Murray, L, Clark, T, Kwiatkowski, DP and Conway, D (2015). Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity: Supplementary data. [Data Collection]. Molecular Biology and Evolution, Oxford Journals. https://doi.org/10.1093/molbev/msu106

Perrin, A, Larsonneur, E, Nicholson, AC, Edwards, DJ, Gundlach, KM, Whitney, AM, Gulvik, CA, Bell, ME, Rendueles, O, Cury, J, Hugon, P, Clermont, D, Enouf, V, Loparev, V, Juieng, P, Monson, T, Warshauer, D, Elbadawi, LI, Walters, MS, Crist, MB, Noble-Wang, J, Borlaug, G, Rocha, EPC, Criscuolo, A, Touchon, M, Davis, JP, Holt, KE, McQuiston, JR and Brisse, S (2017). Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain. [Data Collection]. Nature Communications. https://doi.org/10.1038/ncomms15483

Wright, K, de Silva, K, Plain, KM, Purdie, AC, Blair, TA, Duggin, IG, Britton, WJ and Oehlers, SH (2021). Source data for graphs. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1009186.s008

Wright, K, de Silva, K, Plain, KM, Purdie, AC, Blair, TA, Duggin, IG, Britton, WJ and Oehlers, SH (2021). miR-206 target prediction results from TargetScan analysis. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1009186.s007