Data Collection

Dorman, MJ, Domman, D, Poklepovich, T, Tolley, C, Zolezzi, G, Kane, L, Viñas, MR, Panagópulo, M, Moroni, M, Binsztein, N, Caffer, MI, Clare, S, Dougan, G, Salmond, GPC, Parkhill, J, Campos, J and Thomson, NR (2020). Supporting data for "Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11310131.v1

Chiner-Oms, Álvaro, Berney, M, Boinett, C, González-Candelas, F, Young, DB, Gagneux, S, Jacobs Jr, WR, Parkhill, J, Cortes, T and Comas, I (2019). Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-11948-6

Davies, MR, McIntyre, L, Mutreja, A, Lacey, JA, Lees, JA, Towers, RJ, Duchêne, S, Smeesters, PR, Frost, HR, Price, DJ, Holden, MT, Sophia, D, Giffard, PM, Worthing, KA, Seale, AC, Berkley, JA, Harris, SR, Rivera-Hernandez, T, Berking, O, Cork, AJ, Torres, RS, Lithgow, T, Strugnell, RA, Bergmann, R, Nitsche-Schmitz, P, Chhatwal, GS, Bentley, SD, Fraser, JD, Moreland, NJ, Carapetis, JR, Steer, AC, Parkhill, J, Saul, A, Williamson, DA, Currie, BJ, Tong, SY, Dougan, G and Walker, MJ (2019). Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics. [Data Collection]. Nature Genetics. https://doi.org/10.1038/s41588-019-0417-8

Moradigaravand, D, Martin, V, Peacock, S and Parkhill, J (2017). Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland. [Data Collection]. mBio. https://doi.org/10.1128/mBio.01976-16

Moradigaravand, D, Martin, V, Peacock, SJ and Parkhill, J (2016). Files for "Evolution and epidemiology of multidrug resistant Klebsiella pneumoniae in the UK and Ireland". [Data Collection]. Mendeley Data. https://doi.org/10.17632/xfw8n3wzs5.1

Reuter, S, Török, ME, Holden, MT, Reynolds, R, Raven, KE, Blane, B, Donker, T, Bentley, SD, Aanensen, DM, Grundmann, H, Feil, EJ, Spratt, BG, Parkhill, J and Peacock, S (2015). Staphylococcus Aureus BSAC study data. [Data Collection]. European Nucleotide Archive. http://www.ebi.ac.uk/ena/data/view/ERP001012

Holt, KE, Parkhill, J, Mazzoni, CJ, Roumagnac, P, Weill, F, Goodhead, I, Rance, R, Baker, S, Maskell, DJ, Wain, J, Dolecek, C, Achtman, M and Dougan, G (2008). High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. [Data Collection]. Nature Genetics. https://doi.org/10.1038/ng.195.

Vernikos, GS, Thomson, NR and Parkhill, J (2007). Genetic flux over time in the Salmonella lineage. [Data Collection]. Genome Biology. https://doi.org/10.1186/gb-2007-8-6-r100