Replication Data for: Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant
This dataset contains whole genomic sequences (WGS) obtained from participants enrolled in a household study undertaken within Kilifi County, located in coastal Kenya. In the study, 47 households (HH) scattered across an area of approximately 21 km2 were followed up over a 6-month period beginning December 2009 and ending June 2010 coinciding with the RSV peak activity months in the area. Twice weekly throughout the study period, a nasopharyngeal-flocked swab (NPS) was obtained from each household member regardless of symptom status. The NPS samples were screened for a range of respiratory viral targets using a multiplex real-time RT-PCR method which subtyped RSV positives into RSVA and RSVB.
The whole genome sequencing (WGS) present in this dataset targeted 20 select households that documented RSV infection of ≥2 members.
Keywords
Whole genomic sequencesItem Type | Dataset |
---|---|
Capture method | Unknown |
Date | 6 June 2019 |
Language(s) of written materials | English |
Creator(s) |
Agoti, CN, Plan, MVT, Munywoki, PK, Githinji, G, Medley, GF |
LSHTM Faculty/Department | Faculty of Public Health and Policy > Dept of Global Health and Development |
Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
Date Deposited | 09 Oct 2019 15:20 |
Last Modified | 08 Jul 2021 12:50 |
Publisher | Harvard Dataverse |
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- Harvard Dataverse (Online Data Resource)