Perrin, A, Larsonneur, E, Nicholson, AC, Edwards, DJ, Gundlach, KM, Whitney, AM, Gulvik, CA, Bell, ME, Rendueles, O, Cury, J, Hugon, P, Clermont, D, Enouf, V, Loparev, V, Juieng, P, Monson, T, Warshauer, D, Elbadawi, LI, Walters, MS, Crist, MB, Noble-Wang, J, Borlaug, G, Rocha, EPC, Criscuolo, A, Touchon, M, Davis, JP, Holt, KE, McQuiston, JR and Brisse, S. 2017. Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain. [Online]. Nature Communications. Available from: https://doi.org/10.1038/ncomms15483
Perrin, A, Larsonneur, E, Nicholson, AC, Edwards, DJ, Gundlach, KM, Whitney, AM, Gulvik, CA, Bell, ME, Rendueles, O, Cury, J, Hugon, P, Clermont, D, Enouf, V, Loparev, V, Juieng, P, Monson, T, Warshauer, D, Elbadawi, LI, Walters, MS, Crist, MB, Noble-Wang, J, Borlaug, G, Rocha, EPC, Criscuolo, A, Touchon, M, Davis, JP, Holt, KE, McQuiston, JR and Brisse, S. Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain [Internet]. Nature Communications; 2017. Available from: https://doi.org/10.1038/ncomms15483
Perrin, A, Larsonneur, E, Nicholson, AC, Edwards, DJ, Gundlach, KM, Whitney, AM, Gulvik, CA, Bell, ME, Rendueles, O, Cury, J, Hugon, P, Clermont, D, Enouf, V, Loparev, V, Juieng, P, Monson, T, Warshauer, D, Elbadawi, LI, Walters, MS, Crist, MB, Noble-Wang, J, Borlaug, G, Rocha, EPC, Criscuolo, A, Touchon, M, Davis, JP, Holt, KE, McQuiston, JR and Brisse, S (2017). Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain. [Data Collection]. Nature Communications. https://doi.org/10.1038/ncomms15483
Description
Supplementary files to a paper on evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain. The Excel files cover: Outbreak isolates and comparative strains included in the study, Single nucleotide polymorphisms (SNP) observed among outbreak isolates, Genomic features and annotations associated with the Wisconsin outbreak specific regions and deletion in 4 outbreak strains, Antimicrobial resistance features of the outbreak strain detected using ResFams, Virulence-associated features of the outbreak strain detected using the VFDB database, and Antimicrobial susceptibility values. The text file contain a SNP tree with node names. The XML files contain BEAST input file using cgMLST data, BEAST input file using SNP data.
| Data capture method | Experiment: Field Intervention | ||||
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| Data Collection Period |
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| Date (Date published in a 3rd party system) | 24 May 2017 | ||||
| Language(s) of written materials | English |
| Data Creators | Perrin, A, Larsonneur, E, Nicholson, AC, Edwards, DJ, Gundlach, KM, Whitney, AM, Gulvik, CA, Bell, ME, Rendueles, O, Cury, J, Hugon, P, Clermont, D, Enouf, V, Loparev, V, Juieng, P, Monson, T, Warshauer, D, Elbadawi, LI, Walters, MS, Crist, MB, Noble-Wang, J, Borlaug, G, Rocha, EPC, Criscuolo, A, Touchon, M, Davis, JP, Holt, KE, McQuiston, JR and Brisse, S |
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| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 05 Dec 2018 16:38 |
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| Last Modified | 08 Jul 2021 12:50 |
| Publisher | Nature Communications |
