3 January 2006

Young, JPW, Crossman, LC, Johnston, AW, Thomson, NR, Ghazoui, ZF, Hull, KH, Wexler, M, Curson, AR, Todd, JD, Poole, PS, Mauchline, TH, East, AK, Quail, MA, Churcher, C, Arrowsmith, C, Cherevach, I, Chillingworth, T, Clarke, K, Cronin, A, Davis, P, Fraser, A, Hance, Z, Hauser, H, Jagels, K, Moule, S, Mungall, K, Norbertczak, H, Rabbinowitsch, E, Sanders, M, Simmonds, M, Whitehead, S and Parkhill, J (2006). The genome of Rhizobium leguminosarum has recognizable core and accessory components. [Data Collection]. Genome Biology. https://doi.org/10.1186/gb-2006-7-4-r34

4 June 2007

Vernikos, GS, Thomson, NR and Parkhill, J (2007). Genetic flux over time in the Salmonella lineage. [Data Collection]. Genome Biology. https://doi.org/10.1186/gb-2007-8-6-r100

2009

Carver, T, Thomson, N, Bleasby, A, Berriman, M and Parkhill, J (2009). DNAPlotter: circular and linear interactive genome visualization. [Data Collection]. Github. http://sanger-pathogens.github.io/Artemis/DNAPlotter/

17 July 2009

Perkins, TT, Kingsley, RA, Fookes, MC, Gardner, PP, James, KD, Yu, L, Assefa, SA, He, M, Croucher, NJ, Pickard, DJ, Maskell, DJ, Parkhill, J, Choudhary, J, Thomson, NR and Dougan, G (2009). A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi. [Data Collection]. PLOS Genetics. https://doi.org/10.1371/journal.pgen.1000569

3 November 2011

Arnvig, KB, Comas, I, Thomson, NR, Houghton, J, Boshoff, HI, Croucher, NJ, Rose, G, Perkins, TT, Parkhill, J, Dougan, G and Young, DB (2011). Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis. [Data Collection]. Figshare. https://doi.org/10.1371/journal.ppat.1002342

14 November 2013

Bronowski, C, Fookes, MC, Gilderthorp, R, Ashelford, KE, Harris, SR, Phiri, A, Hall, N, Gordon, MA, Wain, J, Hart, CA, Wigley, P, Thomson, NR and Winstanley, C (2013). Genomic Characterisation of Invasive Non-Typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans Isolates from Malawi. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0002557

1 February 2019

Boinett, CJ, Cain, AK, Hawkey, J, Do Hoang, NT, Khanh, NNT, Thanh, DP, Dordel, J, Campbell, JI, Lan, NPH, Mayho, M, Langridge, GC, Hadfield, J, Chau, NVV, Thwaites, GE, Parkhill, J, Thomson, NR, Holt, KE and Baker, S (2019). Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii. [Data Collection]. Microbial genomics. https://doi.org/10.1099/mgen.0.000246

19 February 2019

Musicha, P, Msefula, CL, Mather, AE, Chaguza, C, Cain, AK, Peno, C, Kallonen, T, Khonga, M, Denis, B, Gray, KJ, Heyderman, RS, Thomson, NR, Everett, DB and Feasey, NA (2019). Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages. [Data Collection]. Journal of Antimicrobial Chemotherapy. https://doi.org/10.1093/jac/dkz032

15 July 2019

Chung The, H, Boinett, C, Pham Thanh, D, Jenkins, C, Weill, F, Howden, BP, Valcanis, M, De Lappe, N, Cormican, M, Wangchuk, S, Bodhidatta, L, Mason, CJ, Nguyen, TNT, Ha Thanh, T, Voong, VP, Duong, VT, Nguyen, PHL, Turner, P, Wick, R, Ceyssens, P, Thwaites, G, Holt, KE, Thomson, NR, Rabaa, MA and Baker, S (2019). Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8856641.v1

22 July 2019

Beale, MA, Marks, M, Sahi, SK, Tantalo, LC, Nori, AV, French, P, Lukehart, SA, Marra, CM and Thomson, N (2019). Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-11216-7

23 October 2019

Chung The, H, Boinett, C, Thanh, DP, Jenkins, C, Weill, F, Howden, BP, Valcanis, M, De Lappe, N, Cormican, M, Wangchuk, S, Bodhidatta, L, Mason, CJ, Thi Nguyen, TN, Ha Thanh, T, Voong, VP, Duong, VT, Lan Nguyen, PH, Turner, P, Wick, R, Ceyssens, P, Thwaites, G, Holt, KE, Thomson, N, Rabaa, MA and Baker, S (2019). Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-12823-0

16 January 2020

Wyres, KL, Nguyen, TNT, Lam, MMC, Judd, LM, van Vinh Chau, N, Dance, DAB, Ip, M, Karkey, A, Ling, CL, Miliya, T, Newton, PN, Lan, NPH, Sengduangphachanh, A, Turner, P, Veeraraghavan, B, Vinh, PV, Vongsouvath, M, Thomson, NR, Baker, S and Holt, KE (2020). Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". [Data Collection]. Monash University. https://doi.org/10.26180/5c67982956721

1 October 2020

Dorman, MJ, Domman, D, Poklepovich, T, Tolley, C, Zolezzi, G, Kane, L, Viñas, MR, Panagópulo, M, Moroni, M, Binsztein, N, Caffer, MI, Clare, S, Dougan, G, Salmond, GPC, Parkhill, J, Campos, J and Thomson, NR (2020). Supporting data for "Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11310131.v1

7 May 2021

Fennell, TG, Blackwell, GA, Thomson, NR and Dorman, MJ (2021). Supporting data for "chiA and gbpA genes are not uniformly distributed amongst diverse Vibrio cholerae". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13169189

28 May 2021

Fennell, TG, Blackwell, GA, Thomson, NR and Dorman, MJ (2021). gbpA and chiA genes are not uniformly distributed amongst diverse Vibrio cholerae. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14398688.v1