Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code

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S1_Code_Simulation_and_inference.txt

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indexcodes.txt

http://eprints.org/relation/isVersionOf https://datacompass.lshtm.ac.uk/id/document/549 http://eprints.org/relation/isVolatileVersionOf https://datacompass.lshtm.ac.uk/id/document/549 http://eprints.org/relation/isIndexCodesVersionOf https://datacompass.lshtm.ac.uk/id/document/549 indefinite Generate index codes conversion from Software to indexcodes archive 3 disk0/00/00/00/95 2015-10-30 16:20:09 2021-07-08 12:52:08 2015-10-30 16:20:09 data_collection show Kucharski Adam 0000-0001-8814-9421 FALSE a1dc2f7ec42bb0301d0fa93d37bd500f Edmunds John 0000-0002-9179-2917 FALSE 3c11a3a890da37a58a5f575c670687f4 London School of Hygiene & Tropical Medicine, London, United Kingdom Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code EPID Age groups Immunity Respiratory infections Infectious disease epidemiology Influenza Monkeypox Simulation and modeling Pathogens Simulation and inference code written in R which generates stochastic multi type outbreaks from a two-class mixing matrix. The inference model generates maximum likelihood estimates of R0 and S from outbreak size data. 2015-04-10 published PLOS Computational Biology Dataset London School of Hygiene & Tropical Medicine, London, United Kingdom Simulation public Dataset Quantitative en PLOS Computational Biology - Data https://doi.org/10.1371/journal.pcbi.1004154.s010 data Figshare Digital Repository http://figshare.com/articles/_Characterizing_the_Transmission_Potential_of_Zoonotic_Infections_from_Minor_Outbreaks_/1374928 data PLOS Computational Biology http://doi.org/10.1371/journal.pcbi.1004154.s010 dataresource Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks. http://researchonline.lshtm.ac.uk/id/eprint/2145735 2015-04-10