MOESM4 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population

212 27 1985 3 6811 document 1985 File1-PCRconditions_and_PrimerSequences.xlsx application/vnd.openxmlformats-officedocument.spreadsheetml.sheet 77c00e552a6999c5aa8955fd42f2a82e168e21fe154ba1d7476d28029189c165 SHA256 17171 2016-05-18 11:24:06 https://datacompass.lshtm.ac.uk/id/eprint/212/1/File1-PCRconditions_and_PrimerSequences.xlsx 212 1 1 application/vnd.openxmlformats-officedocument.spreadsheetml.sheet Dataset en public cc_by

File1-PCRconditions_and_PrimerSequences.xlsx

data indefinite PCR conditions and primer sequences for the gene regions analysed in the 15 merozoite genes 1986 4 6813 document 1986 File2-Merozoite_gene.docx application/vnd.openxmlformats-officedocument.wordprocessingml.document 0bedaab9f36ae3022c1b9a4855029c159e83afd4787b4766b5bb74718b82d0ec SHA256 21480 2016-05-18 11:24:09 https://datacompass.lshtm.ac.uk/id/eprint/212/2/File2-Merozoite_gene.docx 212 2 2 application/vnd.openxmlformats-officedocument.wordprocessingml.document Dataset en public cc_by

File2-Merozoite_gene.docx

data indefinite Merozoite gene allele frequencies in the uncomplicated malaria infections between 2007 and 2008 1987 3 6815 document 1987 File3-genotypeParasitePairs.docx application/vnd.openxmlformats-officedocument.wordprocessingml.document 275b058c6a2c230e5d6e8785c7a1053d70c4c08521f0aa1009536d48742f40a1 SHA256 21451 2016-05-18 11:24:10 https://datacompass.lshtm.ac.uk/id/eprint/212/3/File3-genotypeParasitePairs.docx 212 3 3 application/vnd.openxmlformats-officedocument.wordprocessingml.document Dataset en public cc_by

File3-genotypeParasitePairs.docx

data indefinite The proportion of same and different genotype parasite pairs in vivo and in vitro 1988 3 6817 document 1988 File4-LD_analysis.xlsx application/vnd.openxmlformats-officedocument.spreadsheetml.sheet faafc592d902d43b9004b561b4966a5abdaf733e752659a18912d70e3d9eca06 SHA256 347621 2016-05-18 11:24:15 https://datacompass.lshtm.ac.uk/id/eprint/212/4/File4-LD_analysis.xlsx 212 4 4 application/vnd.openxmlformats-officedocument.spreadsheetml.sheet Dataset en public cc_by

File4-LD_analysis.xlsx

data indefinite Linkage disequilibrium (LD) analysis of all high frequency (>5%) SNPs in all 15 merozoite genes, except eba181 due to limited SNP data 1989 3 6819 document 1989 File5-SNPs_RepeatRegionFrequencies.xlsx application/vnd.openxmlformats-officedocument.spreadsheetml.sheet d83060f414ee77173f294fe61bb0e4ce3856b26836dd3a0d6612bb5e8c37ab93 SHA256 47602 2016-05-18 11:24:18 https://datacompass.lshtm.ac.uk/id/eprint/212/5/File5-SNPs_RepeatRegionFrequencies.xlsx 212 5 5 application/vnd.openxmlformats-officedocument.spreadsheetml.sheet Dataset en public cc_by

File5-SNPs_RepeatRegionFrequencies.xlsx

data indefinite SNPs and repeat region frequencies within the 15 merozoite genes from the uncomplicated malaria infections in 2007 and 2008 to identify significant SNPs 1990 3 6821 document 1990 File6_Rh5_SNPs.docx application/vnd.openxmlformats-officedocument.wordprocessingml.document aab962e3568c0b709c5f0484ce1c93abcd31d12344258616b9e0347578fb0d90 SHA256 12318 2016-05-18 11:24:20 https://datacompass.lshtm.ac.uk/id/eprint/212/6/File6_Rh5_SNPs.docx 212 6 6 application/vnd.openxmlformats-officedocument.wordprocessingml.document Dataset en public cc_by

File6_Rh5_SNPs.docx

data indefinite Rh5 SNPs in 11 geographically distinct laboratory isolates 1991 1 6831 document 1991 indexcodes.txt text/plain 0dcabbda674beb358645024410ae93eb7057666ef1f29b4f9a9589504e4cd2df SHA256 1043 2016-05-18 11:34:08 https://datacompass.lshtm.ac.uk/id/eprint/212/7/indexcodes.txt 212 7 7 text/plain other en public

indexcodes.txt

http://eprints.org/relation/isVersionOf https://datacompass.lshtm.ac.uk/id/document/1986 http://eprints.org/relation/isVolatileVersionOf https://datacompass.lshtm.ac.uk/id/document/1986 http://eprints.org/relation/isIndexCodesVersionOf https://datacompass.lshtm.ac.uk/id/document/1986 indefinite Generate index codes conversion from Dataset to indexcodes 1992 1 6832 document 1992 indexcodes.txt text/plain 28310aafa6c723f8869a50c90ce15663d9dad096d208bd7368a01e032103a195 SHA256 151 2016-05-18 11:34:08 https://datacompass.lshtm.ac.uk/id/eprint/212/8/indexcodes.txt 212 8 8 text/plain other en public

indexcodes.txt

http://eprints.org/relation/isVersionOf https://datacompass.lshtm.ac.uk/id/document/1987 http://eprints.org/relation/isVolatileVersionOf https://datacompass.lshtm.ac.uk/id/document/1987 http://eprints.org/relation/isIndexCodesVersionOf https://datacompass.lshtm.ac.uk/id/document/1987 indefinite Generate index codes conversion from Dataset to indexcodes 1993 1 6833 document 1993 indexcodes.txt text/plain dbaf41df382365f87b830b303c9ef16cbed9e417b25201f11626d9e4be72d1a5 SHA256 146 2016-05-18 11:34:08 https://datacompass.lshtm.ac.uk/id/eprint/212/9/indexcodes.txt 212 9 9 text/plain other en public

indexcodes.txt

http://eprints.org/relation/isVersionOf https://datacompass.lshtm.ac.uk/id/document/1990 http://eprints.org/relation/isVolatileVersionOf https://datacompass.lshtm.ac.uk/id/document/1990 http://eprints.org/relation/isIndexCodesVersionOf https://datacompass.lshtm.ac.uk/id/document/1990 indefinite Generate index codes conversion from Dataset to indexcodes archive 3 disk0/00/00/02/12 2016-05-18 11:34:29 2024-10-04 09:27:17 2016-05-18 11:34:29 data_collection show Ochola-Oyier Lynette Isabella FALSE Okombo John FALSE Wagatua Njoroge FALSE Ochieng Jacob FALSE Tetteh Kevin K 0000-0003-2733-0037 TRUE 189e40e2d9bcf7d05fd9dc843c769fd0 Fegan Greg FALSE Bejon Philip FALSE Marsh Kevin FALSE KEMRI-Wellcome Trust Collaborative Programme London School of Hygiene & Tropical Medicine, London, United Kingdom MOESM4 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population ITIM Rh5 Merozoite Plasmodium Malaria Linkage disequilibrium (LD) analysis of all high frequency (>5%) SNPs in all 15 merozoite genes, except eba181 due to limited SNP data. The analysis was performed by conducting all possible pair-wise comparisons between all the SNPs across 14 merozoite genes using a pair-wise correlation analysis and a Bonferroni correction for multiple comparisons. The red boxes represent significant correlations between SNPs and thus SNPs in LD, orange represents correlations between SNPs that are not significant, white indicates the SNPs that are not correlated and therefore they are not in LD and grey represents cases where the SNP data is missing in one or both of the paired SNPs. 2016-05-06 published Figshare Dataset KEMRI-Wellcome Trust Collaborative Programme London School of Hygiene & Tropical Medicine Experiment public Dataset Quantitative -3.36927 39.9332 -3.6256 39.8042 en 2007 2009 Figshare: Merozoite gene allele frequencies https://doi.org/10.6084/m9.figshare.c.3603686_D1.v1 data Figshare: PCR conditions and primer sequences for gene regions https://doi.org/10.6084/m9.figshare.c.3603686_D2.v1 data Figshare: SNPs and repeat region frequencies within merozoite genes https://doi.org/10.6084/m9.figshare.c.3603686_D3.v1 data Figshare: Linkage disequilibrium analysis of high frequency SNPs https://doi.org/10.6084/m9.figshare.c.3603686_D5.v1 dataresource Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population. http://researchonline.lshtm.ac.uk/id/eprint/2549348 2016-05-06