Plasma biomarker data from the FIEBRE-Mozambique Cohort – Data Codebook

Persistent identifier

10.17037/DATA.00004583

Description

An anonymised dataset of 1,955 paediatric and adult patients with febrile illness in southern Mozambique, who gave informed consent to participate in the prospective observational FIEBRE study between December 2018 and February 2021. Dataset contains variables on biomarker levels in plasma, demographic data, results of basic diagnostic tests and health status data, calculated clinical severity scores, and mortality and other adverse outcomes by day 28 follow-up.

Data Codebook

The following variables are contained within the dataset.

Variable Name Variable Label Answer Label Answer Code Variable Type
id_external Unlinked patient ID value Open ended   Numeric
patient_group Patient group (inpatient/outpatient/adult/child)     Numeric
    Adult inpatient adult_inpatient  
    Adult outpatient adult_outpatient  
    Child inpatient child_inpatient  
    Child outpatient child_outpatient  
health_centre Recruiting hospital     String
    Geral José Macamo Hospital Geral José Macamo Hospital  
    Manhiça District Hospital Manhiça District Hospital  
sex Sex     String
    Female female  
    Male male  
age Age (in years)     Numeric
fever_days Fever duration before enrolment     Numeric
hiv HIV status     String
    Negative negative  
    Positive positive  
    Not recorded .  
hiv_group HIV group     String
    HIV negative negative  
    HIV positive and taking antiretroviral therapy (ART) positive+ART  
    HIV positive - new infection positive+new_infection  
    HIV positive - no antiretroviral therapy (ART) positive+no_ART  
    HIV positive - no information positive+no_info  
    Not recorded    
mrdt Result of malaria RDT     String
    Negative negative  
    Positive positive  
    Not recorded .  
LODS Lambaréné Organ Dysfunction Score (LODS) at enrolment Open ended   Numeric
LqSOFA Liverpool quick Sequential Organ Failure Assessment (LqSOFA) score at enrolment Open ended   Numeric
EDPEWS Emergency Department Paediatric Early Warning Score (ED-PEWS) at enrolment Open ended   Numeric
MEWS Modified Early Warning Score (MEWS) at enrolment Open ended   Numeric
qSOFA Quick Sequential (Sepsis-Related) Organ Failure Assessment (qSOFA) at enrolment Open ended   Numeric
UVA Universal Vital Assessment (UVA) at enrolment Open ended   Numeric
length_hosp_stay Length os hospital stay for inpatients Open ended   Numeric
hospital_outcome Hospital outcome for inpatients     String
    Has left hospital absconded  
    Death death  
    Discharged to home discharge  
    Transferred to other health facility transfer  
    Not applicable NA  
    Not recorded .  
days_to_death Number of days from day 0 visit to death Open ended   Numeric
death7 Did patient die within seven days? (7-day mortality)     String
    No no  
    Yes yes  
    Not completed .  
death28 Did patient die within 28 days? (28-day mortality)     String
    No no  
    Yes yes  
    Not completed .  
revisit28 For outpatients, seeking further care for the same illness since the patient left the hospital     String
    No no  
    Yes yes  
    Not completed .  
readmission28 For outpatients, being readmitted for the same illness since the patient left the hospital     String
    No no  
    Yes yes  
    Not completed .  
IL6 Interleukine-6 (IL-6) levels at enrolment (in pg/mL) Open ended   Numeric
IL8 Interleukine-8 (IL-8) levels at enrolment (in pg/mL) Open ended   Numeric
Angpt2 Angiopoietin-2 (Angpt-2) levels at enrolment (in pg/mL) Open ended   Numeric
sFlt1 Soluble fms-like tyrosine kinase-1 (sFlt-1) levels at enrolment (in pg/mL) Open ended   Numeric
sTREM1 Soluble triggering receptor expressed on myeloid cells 1 (sTREM-1) levels at enrolment (in pg/mL) Open ended   Numeric
sTNFR1 Soluble tumor necrosis factor receptor  (sTNFR1) levels at enrolment (in pg/mL) Open ended   Numeric
suPAR Soluble urokinase-type plasminogen activator receptor (suPAR) levels at enrolment (in ng/mL) Open ended   Numeric
CHI3L1 Chitinase-3-like protein 1 (CHI3L1) levels at enrolment (in pg/mL) Open ended   Numeric
PCT Procalcitonin (PCT) levels at enrolment (in µg/mL) Open ended   Numeric
CRP C-reactive protein (CRP) levels at enrolment (in pg/mL) Open ended   Numeric
lactate Lactate levels at enrolment (in mmol/L) Open ended   Numeric