Patterns of non-communicable comorbidities at start of tuberculosis treatment in three regions of the Philippines: St-ATT cohort baseline data – Codebook

Permanent identifier

https://doi.org/10.17037/DATA.00002476

Description

Data collected as part of a facility-based prospective cohort study conducted in public (government) Tuberculosis (TB) Directly Observed Treatment (DOT) clinics in the Philippine. This dataset contains individual-level information that used in a cross-sectional analysis of  selected data collected from the St-ATT cohort of Filipino adults at baseline who were enrolled within 5 days of initiating a new tuberculosis treatment regimen. Study information is available in the ISRCTN Registry ID: 16347615.

Data collection methods

Data were collected from non-pregnant adults (≥ 18 years old) at enrolment into a facility-based prospective cohort study conducted in public (government) Tuberculosis (TB) Directly Observed Treatment (DOT) clinics in the Philippines (ISRCTN16347615). Persons with bacteriologically confirmed or a clinical diagnosis of pulmonary TB were eligible. Data were collected using structured questionnaires administered by trained research nurses and comprise clinical, anthropometric and socio-demographic variables, along with study measurements from finger prick blood samples. Participants were non-randomly selected from those newly registering in participating clinics.

Data availability

Anonymised data and any remaining sputum/blood samples will be made available for use by health researchers in ethically approved projects related to TB to maximize benefit to research on the health and wellbeing of people living in the Philippines, in accordance with the participant consent agreement.

Codebook

Variable name Variable label Variable type Answer code Answer label
BMI_calculate BMI kg/m2      
DSSM_result4cat DSSM result 4 categories dssm_result_l_ANALYSIS    
      0 negative
      1 1+
      2 2+
      3 ≥3+
HIV_3cat HIV status baseline HIV_3cat    
      0 negative
      1 unknown
      2 positive
HTN_comorbidity Hypertension study definition yesno    
      0 No
      1 Yes
Hypertensive_3cat Hypertension (3 categories) based on systolic/diastolic blood pressure measurement      
Hypertensive_4cat Hypertension (4 categories) based on systolic/diastolic blood pressure measurement      
MDR_YN_baseline Final MDR status at enrolment MDR_YN_baseline    
      0 DS-TB
      1 MDR_TB
TB_new_relapse TB New or (Relapse / Tx after Failure / TALF/ PTOU) TB_new_relapse_label    
      0 New TB case
      1 Relapse/Failure etc
WH_ratio_DMpredictor Waist to hip ratio >=0.9 (male) or >=0.85 (female) yesno    
      0 No
      1 Yes
age_patient_grp Age group age_patient_grp_ANALYSIS    
      0 18-40 years old
      1 41-65 years old
      2 ≥ 65 years old
alcohol_yr4 alcohol drinks/yr quartiles alcohol_yr4    
      0 none/occassional
      1 min/72
      2 73-364
      3 365/max
anaemia_modsev Anaemia (<11g/dl) anaemia_b    
      0 Normal/Mild
      1 Moderate/Severe <11g/dl
anaemia_screening haemoglobin (Hemocue) in g/dL      
appetite_adm_week appetite affected food intake past month, compared to normal appetite_adm    
      0 Severe decrease in food intake
      1 Moderate decrease in food intake
      2 No decrease in food intake
      3 Increase in food intake
average_dia average DBP      
average_sys average SBP      
bmi_17 Undernutrition BMI<17 kg/m2 yesno    
      0 No
      1 Yes
bmi_4cat BMI low categories bmi_4cat    
      0 BMI ≥ 18.5
      1 BMI ≥17 & <18.5
      2 BMI ≥16 & <17
      3 BMI <16
bmi_allcat BMI all categories bmi_allcat    
      0 Normal (BMI 18.5-25.0 kg/m2)
      1 Mild undernutrition (BMI≥17-<18.5 kg/m2)
      2 Mod undernutrition (BMI≥16-<17.0 kg/m2)
      3 Severe undernutrition (BMI<16.0 kg/m2)
      4 Overweight/obese (BMI ≥25.0 kg/m2)
bmi_class_3cat BMI 3 categories bmi_class_3cat    
      1 Underweight
      2 Normal
      3 Overweight/obese
diab_med_yn Are you currently taking any medication for their diabetes? yesno    
      0 No
      1 Yes
diabetes_prev_diag Previously diagnosed as diabetic yesno    
      0 No
      1 Yes
diabetes_study Diabetic according to study definition yesno    
      0 No
      1 Yes
diagnose_BC_CD Final Bacteriological or Clinical diagnosis current TB episode diagnose_BC_CD    
      0 Clinical Dx @ baseline
      1 Bact Conf Dx @ baseline
diasbp_3cat Diastolic AHA 2017 BP 3 categories diasbp_3cat    
      0 Normal
      1 Hyp stage 1
      2 Hyp stage 2
educational_level Education education    
      0 No education
      1 Primary School
      2 Secondary School
      3 Tertiary School
      4 Vocational
employment Are you currently employed? yesno_noans    
      -88 Refusal to reply
      0 No
      1 Yes
family_income What is your monthly family income? income    
      0 Less than 5,000 PHP
      1 5000 - 9999 PHP
      2 10,000 - 14,999 PHP
      3 15,000-19,999 PHP
      4 20,000 PHP or more
      5 Don't know
family_size_adult How many people who are older or equal to 18 years of age live in your household      
family_size_all Total number of people living in the household      
family_size_child How many people who are under of equal to  5 years of age live in your household      
family_size_young How many people who are older or equal to 6 and less than 18 live in your household      
food_intake_modsev appetite affected food intake past month, compared to normal food_intake_modsev    
      1 Moderate/Severe decrease in food intake
      2 No decrease in food intake
      3 Increase in food intake
foodinsecure Food security foodinsecure_label    
      0 Food Secure
      1 Moderate Food Insecurity
      2 Severe Food Insecurity
foodinsecure_modsev Food security status foodinsecure_modsev    
      0 Food secure
      1 Moderate/Severe food insecurity
hba1c_screening Result of the HbA1c screening      
healthcenter Health facility healthcenter    
      101 San Lazaro
      102 San Nicolas
      103 Valladolid
      104 Bago City
      105 Bacolod
      106 La Carlota
      107 Compostela
      108 Carmen
      109 Consolacion
      110 Eversley
      111 Lapu-Lapu
      112 Vicente Sotto
      113 Riverside
      114 Pedro Gil
      115 Philippines General
healthinsurance_YN Health insurance yesno    
      0 No
      1 Yes
hhc_everdiag Number of household contacts ever diagnosed with TB      
htn_drug Do you take any drugs for their hypertension? yesno    
      0 No
      1 Yes
marital_status Marital status of patient marital    
      0 Single
      1 Married
      2 Divorced/separated
      3 Widowed
pmh_htn Previous medical history of hypertension yesno    
      0 No
      1 Yes
region Please indicate in which region the patient was registered region    
      6 Negros Occidental
      7 Cebu
      13 Metropolitan Manila
      60000000 Region VI (Western Visayas)
      70000000 Region VII (Central Visayas)
      130000000 National Capital Region (NCR)
serial_no        
sex Sex of patient male_female    
      0 Female
      1 Male
smoker_packyear_4 smoking exposure smoker_packyear_4    
      0 No smoking
      1 tertile 1 <4.9 packyears
      2 tertile 2, <18.6 packyears
      3 tertile 3, <125 packyears
sysbp_2cat Systolic BP 2 categories sysbp_2cat    
      0 Normal
      1 Hypertensive
sysbp_4cat Systolic BP AHA 2017 4 categories sysbp_4cat    
      0 Normal
      1 Elevated
      2 Hyp stage 1
      3 Hyp stage 2
tb_symp_chills Current TB symptom: Chills yesno    
      0 No
      1 Yes
tb_symp_cough Current TB symptom: Cough yesno    
      0 No
      1 Yes
tb_symp_cpain Current TB symptom: Chest pain yesno    
      0 No
      1 Yes
tb_symp_fatigue Current TB symptom: Fatigue yesno    
      0 No
      1 Yes
tb_symp_fever Current TB symptom: Fever yesno    
      0 No
      1 Yes
tb_symp_haemop Current TB symptom: Haemoptysis yesno    
      0 No
      1 Yes
tb_symp_length Number of days experienced TB symptoms before TX start      
tb_symp_length_cat Duration TB symptoms before treatment tb_symp_length_cat    
      1 < 1 month
      2 1-2 months
      3 2-3 months
      4 > 3 months
tb_symp_nsweats Current TB symptom: Night sweats yesno    
      0 No
      1 Yes
tb_symp_rappetite Current TB symptom: Reduced appetite yesno    
      0 No
      1 Yes
tb_symp_wloss Current TB symptom: Unintentional weight loss yesno    
      0 No
      1 Yes
wt_loss Weight change last 3-6 months wtloss    
      0 Weight stayed same
      1 Weight increase
      2 Weight decrease