Viet Nam tuberculosis prevalence survey: equity analysis code – User Guide

Persistent Identifier:

https://doi.org/10.17037/DATA.00002373

Description

R code and STATA DO files written and used to construct an individual-level analytical dataset from two consecutive nationally representative surveys conducted in Viet Nam in 2007 and 2017. The source datasets can be requested from the Viet Nam National Lung hospital by e-mailing bvptw@bvptw.org.

Code and accompanying files are made available to support a paper, titled “Social determinants of the changing tuberculosis prevalence in Viet Nam: analysis of population-level cross-sectional studies” (This is in-development at the time of writing).

Data collection methods

Cross-sectional surveys using multistage cluster sampling based on the estimated prevalence of TB in the country at the time of the study. One survey was conducted in 2007 and another in 2017. Each cluster was a district. Individuals living in enumerated households were eligible for inclusion in the study if >15 and lived in the household for >3 months (2007 survey) but >2 weeks in the 2017 survey. Participants were screened for TB based on self-reported symptoms and chest radiograph results. Tuberculosis case definition was having had a smear test and at least one positive LJ culture.

Data analysis and preparation

An asset index was constructed using principal component analysis (PCA) of size variables (1) the presence of clay floors, (2) wood as fuel for cooking, (3) ownership of a stereo system, (4) television, (5) motorbike, or (6) car. Using the index, households were divided into four groups based on their relative wealth. “Neighbourhood” provincial poverty variables were generated by combining clusters into provinces and imputing provincial poverty values based on data from the World Bank.

Keywords

Viet Nam, Tuberculosis, Equity, Social determinants

Date

Related resources

The following papers contain further information:

https://doi.org/10.1371/journal.pone.0232142

Data creators

First name Family name Institution ORCID
Nicola Foster London School of Hygiene & Tropical Medicine, London, United Kingdom 0000-000-4630-6243
Hai V Nguyen KNCV Tuberculosefonds, The Hague, The Netherlands 0000-0002-1547-6541
Nhung V Nguyen Viet Nam National Tuberculosis Programme, Hanoi, Viet Nam  
Hoa B Nguyen Viet Nam National Tuberculosis Programme, Hanoi, Viet Nam  
Frank Cobelens Amsterdam Institute for Global Health and Development (AIGHD), Amsterdam, Netherlands 0000-0002-4367-1133
Edine W Tiemersma KNCV Tuberculosefonds, Den Haag, Netherlands  
Matthew Quaife London School of Hygiene & Tropical Medicine, London, United Kingdom 0000-0001-9291-1511
Rein Houben London School of Hygiene & Tropical Medicine, London, United Kingdom 0000-0003-4132-7467

Projects

Project title Funder Grant number Other information
TBornotTB H2020 European Research Council 757699 -

File description

Filename Description File format Other information
clusters.do R code – processes cluster information ASCII text  
fig-ConcIndex.R R code – Figure concentration index ASCII text -
fig-SeP.R R code – figure Socioeconomic position (fig-SeP) ASCII text -
lorenz.do Stata DO file - Lorenz curve for TB symptoms ASCII text -
province.do Stata DO file – Adds cluster-level poverty indicators ASCII text -
read_in.do STATA DO file – Dataset Read In file ASCII text -
Data_dictionary.html Data dictionary for the individual-level analytical dataset created by merging two consecutive nationally representative surveys conducted in Viet Nam in 2007 and 2017 HTML The file was provided as an MS Excel file by the depositor. Repository staff have re-structured the content (to separate description and measurements into separate fields) and converted it to HTML.
2373_userguide.html Viet Nam tuberculosis prevalence survey: equity analysis code – User Guide HTML This document